francois/HowBadIsMyBatch
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adding jupyter to conda env

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frankknoll
2022-12-01 17:06:45 +01:00
parent 3663f1121c
commit 3243d3e836
2 changed files with 4 additions and 1 deletions
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1
environment.yml
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@@ -10,4 +10,5 @@ dependencies:
- requests - requests
- bs4 - bs4
- lxml - lxml
- jupyter
prefix: /home/frankknoll/anaconda3/envs/howbadismybatch-venv prefix: /home/frankknoll/anaconda3/envs/howbadismybatch-venv

4
src/intensivstationen_howbadismybatch.sh
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@@ -1,14 +1,16 @@
#!/bin/bash #!/bin/bash
sudo -i -u frankknoll bash << EOF sudo -i -u frankknoll bash << EOF
PATH=/home/frankknoll/Dokumente/Corona/phantomjs-2.1.1-linux-x86_64/bin:/home/frankknoll/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin PATH=/home/frankknoll/Dokumente/Corona/phantomjs-2.1.1-linux-x86_64/bin:/home/frankknoll/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin
cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src/intensivstationen
cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src/intensivstationen
jupyter nbconvert --to notebook --allow-errors --execute Intensivstationen.ipynb jupyter nbconvert --to notebook --allow-errors --execute Intensivstationen.ipynb
jupyter nbconvert --to html Intensivstationen.nbconvert.ipynb jupyter nbconvert --to html Intensivstationen.nbconvert.ipynb
mailx -a 'Content-Type: text/html' -s "Intensivstationen" -r Knoll_Frank@web.de Knoll_Frank@web.de < Intensivstationen.nbconvert.html mailx -a 'Content-Type: text/html' -s "Intensivstationen" -r Knoll_Frank@web.de Knoll_Frank@web.de < Intensivstationen.nbconvert.html
cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src
conda activate howbadismybatch-venv
jupyter nbconvert --to notebook --allow-errors --execute HowBadIsMyBatch.ipynb jupyter nbconvert --to notebook --allow-errors --execute HowBadIsMyBatch.ipynb
jupyter nbconvert --to html HowBadIsMyBatch.nbconvert.ipynb jupyter nbconvert --to html HowBadIsMyBatch.nbconvert.ipynb
mailx -a 'Content-Type: text/html' -s "How Bad is My Batch" -r Knoll_Frank@web.de Knoll_Frank@web.de < HowBadIsMyBatch.nbconvert.html mailx -a 'Content-Type: text/html' -s "How Bad is My Batch" -r Knoll_Frank@web.de Knoll_Frank@web.de < HowBadIsMyBatch.nbconvert.html
conda deactivate
EOF EOF