adding jupyter to conda env

environment.yml

@@ -10,4 +10,5 @@ dependencies:
   - requests
   - bs4
   - lxml
+  - jupyter
 prefix: /home/frankknoll/anaconda3/envs/howbadismybatch-venv

src/intensivstationen_howbadismybatch.sh

@@ -1,14 +1,16 @@
 #!/bin/bash
 sudo -i -u frankknoll bash << EOF
 PATH=/home/frankknoll/Dokumente/Corona/phantomjs-2.1.1-linux-x86_64/bin:/home/frankknoll/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin
-cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src/intensivstationen
 
+cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src/intensivstationen
 jupyter nbconvert --to notebook --allow-errors --execute Intensivstationen.ipynb
 jupyter nbconvert --to html Intensivstationen.nbconvert.ipynb
 mailx -a 'Content-Type: text/html' -s "Intensivstationen" -r Knoll_Frank@web.de Knoll_Frank@web.de < Intensivstationen.nbconvert.html
 
 cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src
+conda activate howbadismybatch-venv
 jupyter nbconvert --to notebook --allow-errors --execute HowBadIsMyBatch.ipynb
 jupyter nbconvert --to html HowBadIsMyBatch.nbconvert.ipynb
 mailx -a 'Content-Type: text/html' -s "How Bad is My Batch" -r Knoll_Frank@web.de Knoll_Frank@web.de < HowBadIsMyBatch.nbconvert.html
+conda deactivate
 EOF