From 3243d3e836bb7e7afca2ef5e9d529d6b79a6a0f3 Mon Sep 17 00:00:00 2001 From: frankknoll Date: Thu, 1 Dec 2022 17:06:45 +0100 Subject: [PATCH] adding jupyter to conda env --- environment.yml | 1 + src/intensivstationen_howbadismybatch.sh | 4 +++- 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 97b70135175..352eebab599 100644 --- a/environment.yml +++ b/environment.yml @@ -10,4 +10,5 @@ dependencies: - requests - bs4 - lxml + - jupyter prefix: /home/frankknoll/anaconda3/envs/howbadismybatch-venv diff --git a/src/intensivstationen_howbadismybatch.sh b/src/intensivstationen_howbadismybatch.sh index cd60137e1e2..1f5f93de73c 100755 --- a/src/intensivstationen_howbadismybatch.sh +++ b/src/intensivstationen_howbadismybatch.sh @@ -1,14 +1,16 @@ #!/bin/bash sudo -i -u frankknoll bash << EOF PATH=/home/frankknoll/Dokumente/Corona/phantomjs-2.1.1-linux-x86_64/bin:/home/frankknoll/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin -cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src/intensivstationen +cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src/intensivstationen jupyter nbconvert --to notebook --allow-errors --execute Intensivstationen.ipynb jupyter nbconvert --to html Intensivstationen.nbconvert.ipynb mailx -a 'Content-Type: text/html' -s "Intensivstationen" -r Knoll_Frank@web.de Knoll_Frank@web.de < Intensivstationen.nbconvert.html cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages/src +conda activate howbadismybatch-venv jupyter nbconvert --to notebook --allow-errors --execute HowBadIsMyBatch.ipynb jupyter nbconvert --to html HowBadIsMyBatch.nbconvert.ipynb mailx -a 'Content-Type: text/html' -s "How Bad is My Batch" -r Knoll_Frank@web.de Knoll_Frank@web.de < HowBadIsMyBatch.nbconvert.html +conda deactivate EOF