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starting VaccineDistributionByZipcode

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frankknoll
2023-03-08 21:41:56 +01:00
parent f5a260b0d2
commit c1c5df5d8d
6 changed files with 240 additions and 11 deletions
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50
docs/VaccineDistributionByZipcode.html Normal file
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@@ -0,0 +1,50 @@
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta content="width=device-width, initial-scale=1.0" name="viewport" />
<title>Batch Codes of Coronavirus 2019 Vaccines</title>
<link href="https://cdn.datatables.net/1.13.1/css/jquery.dataTables.css" rel="stylesheet" type="text/css" />
<link href="batchCodeTable.css" rel="stylesheet" type="text/css" />
<link href="forkMeOnGitHub.css" rel="stylesheet" type="text/css" />
<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.5.1/jquery.min.js"></script>
<script charset="utf8" src="https://cdn.datatables.net/1.13.1/js/jquery.dataTables.min.js"
type="text/javascript"></script>
<script src="./Utils.js"></script>
<script src="./UIUtils.js"></script>
<script src="./VaccineDistributionByZipcodeTableInitializer.js"></script>
<script>
$(document).ready(function () {
const tableInitializer =
new VaccineDistributionByZipcodeTableInitializer(
{
tableElement: $('#vaccineDistributionByZipcodeTable')
});
tableInitializer.initialize();
});
</script>
</head>
<body>
<span id="forkongithub"><a href="https://github.com/KnollFrank/HowBadIsMyBatch">Fork me on GitHub</a></span>
<h1>Batch Codes of Coronavirus 2019 Vaccines</h1>
<table class="display" id="vaccineDistributionByZipcodeTable">
<thead>
<tr>
<th>PROVIDER_NAME</th>
<th>ZIPCODE_SHP</th>
<th>LOT_NUMBER</th>
<th>DOSES_SHIPPED</th>
</tr>
</thead>
</table>
<p><b>Data Sources:</b>
<a href="https://vaers.hhs.gov/data/datasets.html" target="_blank">Vaccine Adverse Event Reporting System
(VAERS)</a> and
<a href="https://icandecide.org/wp-content/uploads/2022/09/Amended-22-01962-Pfizer-2022-0426-pulled-2022-0823.xlsx"
target="_blank">Vaccine Distribution by Zipcode</a>
</p>
</body>
</html>

81
docs/VaccineDistributionByZipcodeTableInitializer.js Normal file
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class VaccineDistributionByZipcodeTableInitializer {
#tableElement;
#table;
constructor({ tableElement }) {
this.#tableElement = tableElement;
}
initialize() {
this.#table = this.#createEmptyTable();
this.#loadDataIntoTable();
}
#createEmptyTable() {
return this.#tableElement.DataTable(
{
language:
{
searchPlaceholder: "Enter Batch Code"
},
search:
{
return: false
},
processing: true,
deferRender: true,
columnDefs:
[
{
searchable: false,
targets: [this.#getColumnIndex('DOSES_SHIPPED')]
},
{
searchable: true,
targets: [
this.#getColumnIndex('PROVIDER_NAME'),
this.#getColumnIndex('ZIPCODE_SHP'),
this.#getColumnIndex('LOT_NUMBER'),
]
},
]
});
}
#getColumnIndex(columnName) {
switch (columnName) {
case 'PROVIDER_NAME':
return 0;
case 'ZIPCODE_SHP':
return 1;
case 'LOT_NUMBER':
return 2;
case 'DOSES_SHIPPED':
return 3;
}
}
#loadDataIntoTable() {
// FK-TODO: show "Loading.." message or spinning wheel.
fetch('data/vaccineDistributionByZipcode/VaccineDistributionByZipcode.json')
.then(response => response.json())
.then(json => {
this.#setTableRows(json.data);
this.#selectInput();
});
}
#setTableRows(rows) {
this.#table
.clear()
.rows.add(rows)
.draw();
}
#selectInput() {
const input = document.querySelector(".dataTables_filter input");
input.focus();
input.select();
}
}

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docs/data/vaccineDistributionByZipcode/VaccineDistributionByZipcode.json Normal file
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4
src/BatchCodeTablePersister.py
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@@ -42,9 +42,9 @@ def _createAndSaveBatchCodeTableForCountry(createBatchCodeTableForCountry, count
'Severe reports',
'Lethality'
]]
IOUtils.saveDataFrame(
IOUtils.saveDataFrameAsJson(
batchCodeTable,
'../docs/data/batchCodeTables/' + country)
'../docs/data/batchCodeTables/' + country + '.json')
onCountryProcessed(country)

12
src/IOUtils.py
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@@ -3,22 +3,16 @@ import json
class IOUtils:
@staticmethod
def saveDataFrame(dataFrame, file):
# IOUtils.saveDataFrameAsExcelFile(dataFrame, file)
# IOUtils.saveDataFrameAsHtml(dataFrame, file)
IOUtils.saveDataFrameAsJson(dataFrame, file)
@staticmethod
def saveDataFrameAsExcelFile(dataFrame, file):
IOUtils.ensurePath(file)
dataFrame.to_excel(file + '.xlsx')
dataFrame.to_excel(file)
@staticmethod
def saveDataFrameAsHtml(dataFrame, file):
IOUtils.ensurePath(file)
dataFrame.to_html(
file + '.html',
file,
index = False,
table_id = 'batchCodeTable',
classes = 'display',
@@ -29,7 +23,7 @@ class IOUtils:
def saveDataFrameAsJson(dataFrame, file):
IOUtils.ensurePath(file)
dataFrame.to_json(
file + '.json',
file,
orient = "split",
index = False)

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src/VaccineDistributionByZipcode.ipynb Normal file
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{
"cells": [
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import pandas as pd\n",
"\n",
"vaccineDistributionByZipcode = pd.read_excel('tmp/Amended-22-01962-Pfizer-2022-0426-pulled-2022-0823_edited.xlsx')\n",
"vaccineDistributionByZipcode"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"len(vaccineDistributionByZipcode['PROVIDER_NAME'].unique())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"len(vaccineDistributionByZipcode['ZIPCODE_SHP'].unique())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"vaccineDistributionByZipcode['AWARDEE'].unique()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"vaccineDistributionByZipcode['STATE_SHP'].unique()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"vaccineDistributionByZipcode[vaccineDistributionByZipcode['ZIPCODE_SHP'] == '37801']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from IOUtils import IOUtils\n",
"\n",
"IOUtils.saveDataFrameAsJson(vaccineDistributionByZipcode, '../docs/data/vaccineDistributionByZipcode/VaccineDistributionByZipcode.json')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"IOUtils.saveDataFrameAsHtml(vaccineDistributionByZipcode, '../docs/data/vaccineDistributionByZipcode/VaccineDistributionByZipcode.html')"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "howbadismybatch-venv-kernel",
"language": "python",
"name": "howbadismybatch-venv-kernel"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.8"
},
"orig_nbformat": 4
},
"nbformat": 4,
"nbformat_minor": 2
}