updating html file with vaccines from table
This commit is contained in:
frankknoll
144
docs/SymptomsCausedByVaccines/index.html
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144
docs/SymptomsCausedByVaccines/index.html
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<!DOCTYPE html>
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<html>
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<head>
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<meta content="text/html; charset=utf-8" http-equiv="Content-Type"/>
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<!-- Meta, title, CSS, favicons, etc. -->
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<meta charset="utf-8"/>
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<meta content="IE=edge" http-equiv="X-UA-Compatible"/>
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<meta content="width=device-width, initial-scale=1.0" name="viewport"/>
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<title>Symptoms caused by Vaccines</title>
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<!-- Google tag (gtag.js) -->
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<!-- <script async="" src="https://www.googletagmanager.com/gtag/js?id=G-ERHYDH4P64"></script>
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<script>Claudia Goldin
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window.dataLayer = window.dataLayer || [];
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function gtag() { dataLayer.push(arguments); }
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gtag('js', new Date());
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gtag('config', 'G-ERHYDH4P64');
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</script> -->
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<!-- Bootstrap -->
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<link href="../gentelella/vendors/bootstrap/dist/css/bootstrap.min.css" rel="stylesheet"/>
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<link href="https://cdn.datatables.net/1.13.1/css/jquery.dataTables.css" rel="stylesheet" type="text/css"/>
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<!-- Font Awesome -->
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<link href="../gentelella/vendors/font-awesome/css/font-awesome.min.css" rel="stylesheet"/>
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<!-- Custom Theme Style -->
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<link href="../gentelella/build/css/custom.css" rel="stylesheet"/>
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<link href="../forkMeOnGitHub.css" rel="stylesheet" type="text/css"/>
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<script src="../Utils.js"></script>
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<script src="../UIUtils.js"></script>
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<script src="../DataTablesFilter.js"></script>
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<script src="../NumberWithBarElementFactory.js"></script>
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<script src="../GoogleAnalytics.js"></script>
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<script src="../BatchCodeSelectInitializer.js"></script>
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<script src="../HistoDescrsProvider.js"></script>
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<script src="../HistogramTable.js"></script>
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<script src="../AdverseReactionReportsChartView.js"></script>
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<script src="../BatchCodeDetailsView.js"></script>
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<script>
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document.addEventListener(
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"DOMContentLoaded",
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event => {
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BatchCodeSelectInitializer.initialize(
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{
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batchCodeSelectElement: $('#batchCodeSelect'),
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batchCodeDetailsElement: document.querySelector("#batchCodeDetails")
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}
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);
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});
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</script>
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</head>
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<body class="nav-md">
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<div class="container body">
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<div class="main_container">
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<!-- top navigation -->
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<div class="top_nav">
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</div>
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<!-- top navigation -->
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<!-- page content -->
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<div class="right_col" role="main">
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<div>
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<div class="page-title">
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<div class="title_left">
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<h1>Symptoms caused by Vaccines</h1>
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</div>
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</div>
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<div class="clearfix"></div>
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<p>
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<label>Check out your batch code:</label>
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<select id="vaccineSelect" name="vaccine"><option disabled="" hidden="" selected="" value="">Select Vaccine</option><option value="6VAX-F">6VAX-F</option><option value="ADEN">ADEN</option><option value="ADEN_4_7">ADEN_4_7</option><option value="ANTH">ANTH</option><option value="BCG">BCG</option><option value="CEE">CEE</option><option value="CHOL">CHOL</option><option value="COVID19">COVID19</option><option value="COVID19-2">COVID19-2</option><option value="DF">DF</option><option value="DPIPV">DPIPV</option><option value="DPP">DPP</option><option value="DT">DT</option><option value="DTAP">DTAP</option><option value="DTAPH">DTAPH</option><option value="DTAPHEPBIP">DTAPHEPBIP</option><option value="DTAPIPV">DTAPIPV</option><option value="DTAPIPVHIB">DTAPIPVHIB</option><option value="DTIPV">DTIPV</option><option value="DTOX">DTOX</option><option value="DTP">DTP</option><option value="DTPHEP">DTPHEP</option><option value="DTPHIB">DTPHIB</option><option value="DTPIHI">DTPIHI</option><option value="DTPIPV">DTPIPV</option><option value="DTPPHIB">DTPPHIB</option><option value="DTPPVHBHPB">DTPPVHBHPB</option><option value="EBZR">EBZR</option><option value="FLU(H1N1)">FLU(H1N1)</option><option value="FLU3">FLU3</option><option value="FLU4">FLU4</option><option value="FLUA3">FLUA3</option><option value="FLUA4">FLUA4</option><option value="FLUC3">FLUC3</option><option value="FLUC4">FLUC4</option><option value="FLUN(H1N1)">FLUN(H1N1)</option><option value="FLUN3">FLUN3</option><option value="FLUN4">FLUN4</option><option value="FLUR3">FLUR3</option><option value="FLUR4">FLUR4</option><option value="FLUX">FLUX</option><option value="FLUX(H1N1)">FLUX(H1N1)</option><option value="H5N1">H5N1</option><option value="HBHEPB">HBHEPB</option><option value="HBPV">HBPV</option><option value="HEP">HEP</option><option value="HEPA">HEPA</option><option value="HEPAB">HEPAB</option><option value="HEPATYP">HEPATYP</option><option value="HIBV">HIBV</option><option value="HPV2">HPV2</option><option value="HPV4">HPV4</option><option value="HPV9">HPV9</option><option value="HPVX">HPVX</option><option value="IPV">IPV</option><option value="JEV">JEV</option><option value="JEV1">JEV1</option><option value="JEVX">JEVX</option><option value="LYME">LYME</option><option value="MEA">MEA</option><option value="MEN">MEN</option><option value="MENB">MENB</option><option value="MENHIB">MENHIB</option><option value="MER">MER</option><option value="MM">MM</option><option value="MMR">MMR</option><option value="MMRV">MMRV</option><option value="MNC">MNC</option><option value="MNQ">MNQ</option><option value="MNQHIB">MNQHIB</option><option value="MU">MU</option><option value="MUR">MUR</option><option value="OPV">OPV</option><option value="PER">PER</option><option value="PLAGUE">PLAGUE</option><option value="PNC">PNC</option><option value="PNC10">PNC10</option><option value="PNC13">PNC13</option><option value="PNC15">PNC15</option><option value="PNC20">PNC20</option><option value="PPV">PPV</option><option value="RAB">RAB</option><option value="RUB">RUB</option><option value="RV">RV</option><option value="RV1">RV1</option><option value="RV5">RV5</option><option value="RVX">RVX</option><option value="SMALL">SMALL</option><option value="SMALLMNK">SMALLMNK</option><option value="SSEV">SSEV</option><option value="TBE">TBE</option><option value="TD">TD</option><option value="TDAP">TDAP</option><option value="TDAPIPV">TDAPIPV</option><option value="TTOX">TTOX</option><option value="TYP">TYP</option><option value="UNK">UNK</option><option value="VARCEL">VARCEL</option><option value="VARZOS">VARZOS</option><option value="YF">YF</option></select>
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or view a <a href="batchCodes.html" target="_blank">table of all batch codes <i aria-hidden="true" class="fa fa-external-link"></i>
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</a>
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</p>
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<div class="row" id="batchCodeDetails">
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<div class="col-xs-12 col-sm-6">
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<div class="x_panel">
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<div class="x_title">
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<h3>Outcomes of Adverse Events</h3>
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<div class="clearfix"></div>
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</div>
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<div class="x_content">
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<canvas id="adverseReactionReportsChartView"></canvas>
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</div>
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</div>
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</div>
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<div class="col-xs-12 col-sm-6">
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<div class="x_panel">
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<div class="x_title">
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<h3>Frequencies of Reported Symptoms</h3>
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<div class="clearfix"></div>
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</div>
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<div class="x_content">
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<table class="display" id="histogramTable">
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<thead>
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<tr>
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<th>Symptom</th>
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<th>Frequency</th>
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</tr>
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</thead>
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</table>
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</div>
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</div>
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</div>
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</div>
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<div class="clearfix"></div>
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</div>
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</div>
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</div>
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<!-- page content -->
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<!-- footer content -->
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<footer>
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<dl>
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<dt>Data Source:</dt>
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<dd><a href="https://vaers.hhs.gov/data/datasets.html" target="_blank">Vaccine Adverse Event Reporting System
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(VAERS) <i aria-hidden="true" class="fa fa-external-link"></i>
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</a></dd>
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<dt>Last updated:</dt>
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<dd id="last_updated">October 06, 2023</dd>
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</dl>
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<span id="forkongithub"><a href="https://github.com/KnollFrank/HowBadIsMyBatch" target="_blank">Fork me on
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GitHub <i aria-hidden="true" class="fa fa-external-link"></i>
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</a></span>
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<div class="clearfix"></div>
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</footer>
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</div>
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<template id="template-number-with-bar">
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<div>
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<div class="number"></div>
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<div class="bar"></div>
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</div>
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</template>
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<!-- jQuery -->
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<script src="../gentelella/vendors/jquery/dist/jquery.min.js"></script>
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<!-- Bootstrap -->
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<script src="../gentelella/vendors/bootstrap/dist/js/bootstrap.min.js"></script>
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<link href="https://cdn.jsdelivr.net/npm/select2@4.1.0-rc.0/dist/css/select2.min.css" rel="stylesheet"/>
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<script src="https://cdn.jsdelivr.net/npm/select2@4.1.0-rc.0/dist/js/select2.min.js"></script>
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<script src="https://cdn.jsdelivr.net/npm/chart.js@4.2.0/dist/chart.umd.min.js"></script>
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<script charset="utf8" src="https://cdn.datatables.net/1.13.1/js/jquery.dataTables.min.js" type="text/javascript"></script>
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<script src=" https://cdn.jsdelivr.net/npm/chartjs-plugin-datalabels@2.2.0/dist/chartjs-plugin-datalabels.min.js "></script>
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<!-- FastClick -->
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<script src="../gentelella/vendors/fastclick/lib/fastclick.js"></script>
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<!-- Custom Theme Scripts -->
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<script src="../gentelella/build/js/custom.js"></script>
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</body>
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</html>
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@@ -205,18 +205,6 @@
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"countryCountsByBatchcode"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "0d755bc8",
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"metadata": {},
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"outputs": [],
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"source": [
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"# df = countryCountsByBatchcode.loc[(slice(None), 'Germany'), :][['COUNTRY_COUNT_BY_VAX_LOT Clicked']].sort_values(by = 'COUNTRY_COUNT_BY_VAX_LOT Clicked', ascending = False)\n",
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"symptomByVaccineInPercent = countryCountsByBatchcode.loc[(slice(None), 'Germany'), :].sort_values(by = 'COUNTRY_COUNT_BY_VAX_LOT Clicked', ascending = False)\n",
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"symptomByVaccineInPercent"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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@@ -437,6 +425,17 @@
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"# Symptoms caused by Vaccines\n"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "5cd9935f",
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"metadata": {},
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"outputs": [],
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"source": [
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"from SymptomsCausedByVaccines.HtmlUpdater import updateHtmlFile\n",
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"import pandas as pd"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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@@ -444,13 +443,11 @@
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"metadata": {},
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"outputs": [],
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"source": [
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"import pandas as pd\n",
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"\n",
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"symptomByVaccineInPercent = pd.read_csv(\n",
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"symptomByVaccine = pd.read_csv(\n",
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" 'data/ratings-1990-2022.csv',\n",
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" index_col = 'VAX_TYPE',\n",
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" usecols = lambda columnName: columnName != 'Unnamed: 0')\n",
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"symptomByVaccineInPercent"
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"symptomByVaccine"
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]
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},
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{
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@@ -460,7 +457,20 @@
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"metadata": {},
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"outputs": [],
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"source": [
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"symptomByVaccineInPercent.loc['COVID19'].sum()"
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"symptomByVaccine.loc['COVID19'].sum()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "803dfbef",
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"metadata": {},
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"outputs": [],
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"source": [
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"updateHtmlFile(\n",
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" symptomByVaccine,\n",
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" htmlFile = \"../docs/SymptomsCausedByVaccines/index.html\",\n",
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" lastUpdated = dateProvider.getLastUpdatedDataSource())"
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]
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}
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],
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34
src/SymptomsCausedByVaccines/HtmlUpdater.py
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34
src/SymptomsCausedByVaccines/HtmlUpdater.py
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from bs4 import BeautifulSoup
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from HtmlTransformerUtil import HtmlTransformerUtil
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from DateProvider import DateProvider
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from SymptomsCausedByVaccines.Analyzer import Analyzer
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from SymptomsCausedByVaccines.HtmlUtils import getVaccineOptions
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from SymptomsCausedByVaccines.OptionsSetter import OptionsSetter
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def updateHtmlFile(symptomByVaccine, htmlFile, lastUpdated):
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vaccineOptions = getVaccineOptions(Analyzer(symptomByVaccine).getVaccines())
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_saveVaccineOptions(vaccineOptions, htmlFile)
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saveLastUpdated2HtmlFile(lastUpdated, htmlFile)
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def _saveVaccineOptions(vaccineOptions, htmlFile):
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HtmlTransformerUtil().applySoupTransformerToFile(
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file=htmlFile,
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soupTransformer = lambda soup:
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BeautifulSoup(
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OptionsSetter().setOptions(
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html = str(soup),
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selectElementId = 'vaccineSelect',
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options = vaccineOptions),
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'lxml'))
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# FK-TODO: DRY with src/BatchCodeTableHtmlUpdater.py
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def saveLastUpdated2HtmlFile(lastUpdated, htmlFile):
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def setLastUpdated(soup):
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soup.find(id="last_updated").string.replace_with(
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lastUpdated.strftime(DateProvider.DATE_FORMAT))
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return soup
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HtmlTransformerUtil().applySoupTransformerToFile(
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file = htmlFile,
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soupTransformer = setLastUpdated)
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10
src/SymptomsCausedByVaccines/HtmlUtils.py
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10
src/SymptomsCausedByVaccines/HtmlUtils.py
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@@ -0,0 +1,10 @@
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def getVaccineOptions(vaccines):
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return ['<option hidden disabled selected value>Select Vaccine</option>'] + _getVaccineOptions(vaccines)
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def _getVaccineOptions(vaccines):
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return [_getVaccineOption(vaccine) for vaccine in vaccines]
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def _getVaccineOption(vaccine):
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return '<option value="{vaccine}">{vaccine}</option>'.format(vaccine=vaccine)
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Reference in New Issue
Block a user