francois/HowBadIsMyBatch
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

invoking global versions of methods

Browse Source
This commit is contained in:
frankknoll
2023-02-11 02:20:18 +01:00
parent c80d570907
commit 10a7185b0a
1 changed files with 35 additions and 14 deletions
Download Patch File Download Diff File Expand all files Collapse all files

49
src/HowBadIsMyBatch.ipynb
View File

@@ -110,6 +110,16 @@
"symptomByBatchcodeTable"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "5997ee59",
"metadata": {},
"outputs": [],
"source": [
"isGlobal = True"
]
},
{
"cell_type": "code",
"execution_count": null,
@@ -119,7 +129,7 @@
"source": [
"from SymptomHistogramByBatchcodeTableFactory import SymptomHistogramByBatchcodeTableFactory\n",
"\n",
"symptomHistogramByBatchcodeTable = SymptomHistogramByBatchcodeTableFactory.createSymptomHistogramByBatchcodeTable(symptomByBatchcodeTable)\n",
"symptomHistogramByBatchcodeTable = SymptomHistogramByBatchcodeTableFactory.createGlobalSymptomHistogramByBatchcodeTable(symptomByBatchcodeTable) if isGlobal else SymptomHistogramByBatchcodeTableFactory.createSymptomHistogramByBatchcodeTable(symptomByBatchcodeTable)\n",
"symptomHistogramByBatchcodeTable"
]
},
@@ -132,7 +142,7 @@
"source": [
"from HistogramTable2DictTableConverter import HistogramTable2DictTableConverter\n",
"\n",
"dictByBatchcodeTable = HistogramTable2DictTableConverter.convertHistogramTable2DictTable(symptomHistogramByBatchcodeTable)\n",
"dictByBatchcodeTable = HistogramTable2DictTableConverter.convertGlobalHistogramTable2DictTable(symptomHistogramByBatchcodeTable) if isGlobal else HistogramTable2DictTableConverter.convertHistogramTable2DictTable(symptomHistogramByBatchcodeTable)\n",
"dictByBatchcodeTable"
]
},
@@ -148,21 +158,32 @@
"from HistogramDescriptionPersister import HistogramDescriptionPersister\n",
"import shutil\n",
"\n",
"countries = getCountries(international_VAERSVAX_Covid19)\n",
"\n",
"for count, country in enumerate(countries, start = 1):\n",
" # FK-TODO: use https://github.com/tqdm/tqdm\n",
" print(f'saving histograms for country {count}/{len(countries)}: {country}')\n",
" dictByBatchcodeTable4Country = dictByBatchcodeTable[dictByBatchcodeTable['COUNTRY'] == country]\n",
" batchcodes = MultiIndexValuesProvider.getValues(dictByBatchcodeTable4Country.index)\n",
"if isGlobal:\n",
" batchcodes = MultiIndexValuesProvider.getValues(dictByBatchcodeTable.index)\n",
" batchcodes = {batchcode for batchcode in batchcodes if batchcode != 'nan'}\n",
" directory = f'../docs/data/histograms/{country}'\n",
" # directory = f'../docs/data/histograms/global'\n",
" directory = f'../docs/data/histograms'\n",
" shutil.rmtree(directory, ignore_errors = True)\n",
" histogramDescriptionPersister = HistogramDescriptionPersister(directory)\n",
" histogramDescriptionPersister.saveHistogramDescriptionsForBatchcodes(\n",
" batchcodes,\n",
" dictByBatchcodeTable4Country,\n",
" progress = lambda count, size, batchcode: print(f'{count}/{size}: {batchcode}'))"
" dictByBatchcodeTable,\n",
" progress = lambda count, size, batchcode: print(f'{count}/{size}: {batchcode}'))\n",
"else:\n",
" countries = getCountries(international_VAERSVAX_Covid19)\n",
" for count, country in enumerate(countries, start = 1):\n",
" # FK-TODO: use https://github.com/tqdm/tqdm\n",
" print(f'saving histograms for country {count}/{len(countries)}: {country}')\n",
" dictByBatchcodeTable4Country = dictByBatchcodeTable[dictByBatchcodeTable['COUNTRY'] == country]\n",
" batchcodes = MultiIndexValuesProvider.getValues(dictByBatchcodeTable4Country.index)\n",
" batchcodes = {batchcode for batchcode in batchcodes if batchcode != 'nan'}\n",
" directory = f'../docs/data/histograms/{country}'\n",
" shutil.rmtree(directory, ignore_errors = True)\n",
" histogramDescriptionPersister = HistogramDescriptionPersister(directory)\n",
" histogramDescriptionPersister.saveHistogramDescriptionsForBatchcodes(\n",
" batchcodes,\n",
" dictByBatchcodeTable4Country,\n",
" progress = lambda count, size, batchcode: print(f'{count}/{size}: {batchcode}'))"
]
},
{
@@ -213,9 +234,9 @@
],
"metadata": {
"kernelspec": {
"display_name": "howbadismybatch-venv-kernel",
"display_name": "howbadismybatch-venv",
"language": "python",
"name": "howbadismybatch-venv-kernel"
"name": "python3"
},
"language_info": {
"codemirror_mode": {