HowBadIsMyBatch/src/HowBadIsMyBatch.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9de5907f-18f5-4cb1-903e-26028ff1fa03",
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "\n",
    "pd.set_option('display.max_rows', 100)\n",
    "pd.set_option('display.max_columns', None)\n",
    "\n",
    "import os\n",
    "from VAERSFileDownloader import updateVAERSFiles\n",
    "from datetime import datetime\n",
    "from InternationalVaersCovid19Provider import getInternationalVaersCovid19, get_international_VAERSVAX_VAERSSYMPTOMS_Covid19\n",
    "from BatchCodeTableHtmlUpdater import updateBatchCodeTableHtmlFile\n",
    "from BatchCodeTablePersister import createAndSaveBatchCodeTables\n",
    "from SymptomByBatchcodeTableFactory import SymptomByBatchcodeTableFactory\n",
    "from HistogramFactoryAndPersister import createAndSaveGlobalHistograms, createAndSaveHistogramsForCountries\n",
    "from BatchCodeTableFactory import BatchCodeTableFactory\n",
    "from BatchCodeTableHavingGuessedCountriesFactory import BatchCodeTableHavingGuessedCountriesFactory\n",
    "from CountriesByBatchcodeProvider import getCountryCountsByBatchcodeTable\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d1e4fa9e",
   "metadata": {},
   "outputs": [],
   "source": [
    "print(datetime.now().strftime(\"%d.%m.%Y, %H:%M:%S Uhr\"))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "194b7357",
   "metadata": {},
   "outputs": [],
   "source": [
    "years_from_start_of_COVID_vaccination_to_present = list(range(2020, datetime.now().year + 1))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a793dff0",
   "metadata": {},
   "outputs": [],
   "source": [
    "updateVAERSFiles(\n",
    "        years = years_from_start_of_COVID_vaccination_to_present,\n",
    "        workingDirectory = os.getcwd())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "58333a19",
   "metadata": {},
   "outputs": [],
   "source": [
    "international_VAERSVAX_Covid19, international_VAERSSYMPTOMS = get_international_VAERSVAX_VAERSSYMPTOMS_Covid19(years = years_from_start_of_COVID_vaccination_to_present)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f10b558f",
   "metadata": {},
   "outputs": [],
   "source": [
    "international_VAERSVAX_Covid19"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "3e0908fe",
   "metadata": {},
   "outputs": [],
   "source": [
    "international_VAERSSYMPTOMS"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "204af94d",
   "metadata": {},
   "outputs": [],
   "source": [
    "symptomByBatchcodeTable = SymptomByBatchcodeTableFactory.createSymptomByBatchcodeTable(international_VAERSVAX_Covid19, international_VAERSSYMPTOMS)\n",
    "symptomByBatchcodeTable"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "23731536",
   "metadata": {},
   "outputs": [],
   "source": [
    "createAndSaveGlobalHistograms(symptomByBatchcodeTable)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f8e42955",
   "metadata": {},
   "outputs": [],
   "source": [
    "createAndSaveHistogramsForCountries(symptomByBatchcodeTable)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "781ac80e",
   "metadata": {},
   "outputs": [],
   "source": [
    "internationalVaersCovid19 = getInternationalVaersCovid19(dataDir = 'VAERS', years = years_from_start_of_COVID_vaccination_to_present)\n",
    "internationalVaersCovid19"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8d6507ca",
   "metadata": {},
   "outputs": [],
   "source": [
    "updateBatchCodeTableHtmlFile(internationalVaersCovid19, batchCodeTableHtmlFile=\"../docs/batchCodeTable.html\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "0915aa5a",
   "metadata": {},
   "outputs": [],
   "source": [
    "createAndSaveBatchCodeTables(\n",
    "    internationalVaersCovid19,\n",
    "    minADRsForLethality = 100,\n",
    "    batchCodeTableFactory = BatchCodeTableHavingGuessedCountriesFactory(BatchCodeTableFactory(internationalVaersCovid19)),\n",
    "    onCountryProcessed = display)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d6c2b650",
   "metadata": {},
   "outputs": [],
   "source": [
    "countryCountsByBatchcode = getCountryCountsByBatchcodeTable()\n",
    "countryCountsByBatchcode"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "dd9fb2b0",
   "metadata": {},
   "outputs": [],
   "source": [
    "countryCountsByBatchcode.to_excel('tmp/countryCountsByBatchcode.xlsx')"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "howbadismybatch-venv-kernel",
   "language": "python",
   "name": "howbadismybatch-venv-kernel"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.9.15"
  },
  "vscode": {
   "interpreter": {
    "hash": "1bce2b9b19ce5f16d695ff75ac05095b3e564c169ff454b58b87cb796c0695b8"
   }
  }
 },
 "nbformat": 4,
 "nbformat_minor": 5
}