HowBadIsMyBatch/HowBadIsMyBatch.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9de5907f-18f5-4cb1-903e-26028ff1fa03",
   "metadata": {},
   "outputs": [],
   "source": [
    "import numpy as np\n",
    "import pandas as pd\n",
    "pd.set_option('display.max_rows', 100)\n",
    "pd.set_option('display.max_columns', None)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ad0e6044",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_patients_22 = pd.read_csv(\"VAERS/2021VAERSData/2021VAERSDATA.csv\", index_col='VAERS_ID', encoding='latin1', low_memory=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "4472e902",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_patients_22.index\n",
    "df_patients_22"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "fb54ec47",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_vax_22 = pd.read_csv(\"VAERS/2021VAERSData/2021VAERSVAX.csv\", index_col='VAERS_ID', encoding='latin1')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d8942466",
   "metadata": {
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "df_vax_22"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d31c5225",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_COVID19_22 = df_vax_22[df_vax_22[\"VAX_TYPE\"] == \"COVID19\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "be2b57c9",
   "metadata": {
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "df_COVID19_22"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8c432ab2",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_patients_COVID19 = pd.merge(df_patients_22, df_COVID19_22, left_index=True, right_index=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "fef882ff",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_patients_22.shape, df_COVID19_22.shape, df_patients_COVID19.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6ce15322",
   "metadata": {
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "# pd.set_option('display.max_rows', 100)\n",
    "df_patients_COVID19"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "233bc590",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_PFIZER_BIONTECH = df_patients_COVID19[df_patients_COVID19[\"VAX_MANU\"] == \"MODERNA\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "86e0e4f2",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_PFIZER_BIONTECH.info()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "0ad4aab2",
   "metadata": {},
   "outputs": [],
   "source": [
    "df_PFIZER_BIONTECH"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "349da946",
   "metadata": {
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "df_DIED = df_PFIZER_BIONTECH[df_PFIZER_BIONTECH['DIED']=='Y'][['VAX_LOT']]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "2f660707",
   "metadata": {
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "df_DISABLE = df_PFIZER_BIONTECH[df_PFIZER_BIONTECH['DISABLE']=='Y'][['VAX_LOT']]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9f537710",
   "metadata": {
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "df_L_THREAT = df_PFIZER_BIONTECH[df_PFIZER_BIONTECH['L_THREAT']=='Y'][['VAX_LOT']]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f675fcfe",
   "metadata": {
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "df_ADR = df_PFIZER_BIONTECH[['VAX_LOT']]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "99945ca8",
   "metadata": {},
   "outputs": [],
   "source": [
    "df = pd.concat(\n",
    "    {\n",
    "        'ADRs': df_ADR.value_counts(),\n",
    "        'DEATHS': df_DIED.value_counts(),\n",
    "        'DISABILITIES': df_DISABLE.value_counts(),\n",
    "        'LIFE THREATENING ILLNESSES': df_L_THREAT.value_counts()\n",
    "    },\n",
    "    axis=1)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d9191d12",
   "metadata": {},
   "outputs": [],
   "source": [
    "df"
   ]
  }
 ],
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