{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9de5907f-18f5-4cb1-903e-26028ff1fa03",
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "\n",
    "pd.set_option('display.max_rows', 100)\n",
    "pd.set_option('display.max_columns', None)\n",
    "\n",
    "from VAERSFileDownloader import updateVAERSFiles\n",
    "from datetime import datetime\n",
    "from DateProvider import DateProvider\n",
    "from InternationalVaersCovid19Provider import getInternationalVaersCovid19\n",
    "from BatchCodeTableHtmlUpdater import updateBatchCodeTableHtmlFile"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d1e4fa9e",
   "metadata": {},
   "outputs": [],
   "source": [
    "print(datetime.now().strftime(\"%d.%m.%Y, %H:%M:%S Uhr\"))\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ffad1c04",
   "metadata": {},
   "outputs": [],
   "source": [
    "dateProvider = DateProvider()\n",
    "print('          lastUpdated:', dateProvider.getLastUpdated())\n",
    "print('lastUpdatedDataSource:', dateProvider.getLastUpdatedDataSource())        \n",
    "needsUpdate = dateProvider.needsUpdate()\n",
    "print('needsUpdate:', needsUpdate)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e673b947",
   "metadata": {},
   "outputs": [],
   "source": [
    "def getWorkingDirectory():\n",
    "    pwd = ! \"pwd\"\n",
    "    return pwd[0]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e313a06c",
   "metadata": {},
   "outputs": [],
   "source": [
    "getWorkingDirectory()"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "9514f5be",
   "metadata": {},
   "source": [
    "## Download VAERS-Data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a793dff0",
   "metadata": {},
   "outputs": [],
   "source": [
    "updateVAERSFiles(needsUpdate, getWorkingDirectory())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "781ac80e",
   "metadata": {},
   "outputs": [],
   "source": [
    "internationalVaersCovid19 = getInternationalVaersCovid19(years = [2020, 2021, 2022])\n",
    "internationalVaersCovid19"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8d6507ca",
   "metadata": {},
   "outputs": [],
   "source": [
    "updateBatchCodeTableHtmlFile(internationalVaersCovid19, batchCodeTableHtmlFile=\"../docs/batchCodeTable.html\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8de69f66",
   "metadata": {},
   "outputs": [],
   "source": [
    "def publishGitHubPages():\n",
    "    %cd /home/frankknoll/Dokumente/Corona/projects/HowBadIsMyBatch-pages\n",
    "    ! git add -A\n",
    "    ! git commit -m \"updating data for batch codes\"\n",
    "    ! git push"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "3c7319f3",
   "metadata": {},
   "source": [
    "### see https://knollfrank.github.io/HowBadIsMyBatch/batchCodeTable.html"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "865df645",
   "metadata": {},
   "outputs": [],
   "source": [
    "publishGitHubPages()"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3.10.7 64-bit",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.10.7"
  },
  "vscode": {
   "interpreter": {
    "hash": "916dbcbb3f70747c44a77c7bcd40155683ae19c65e1c03b4aa3499c5328201f1"
   }
  }
 },
 "nbformat": 4,
 "nbformat_minor": 5
}