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refactoring

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frankknoll
2022-02-10 01:45:01 +01:00
parent 94f31286a0
commit f9494e7aa8
1 changed files with 10 additions and 5 deletions
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15
HowBadIsMyBatch.ipynb
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@@ -1165,6 +1165,14 @@
"#### Pfizer Batches" "#### Pfizer Batches"
] ]
}, },
{
"cell_type": "markdown",
"id": "f6e460ab",
"metadata": {},
"source": [
"see https://www.howbadismybatch.com/clusters.html"
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
@@ -1189,16 +1197,13 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"# https://www.howbadismybatch.com/clusters.html\n",
"\n",
"import re\n", "import re\n",
"\n", "\n",
"batchCodeTable = createADRsByVAX_LOTTable(vaers, \"PFIZER\\BIONTECH\")\n", "batchCodeTable = createADRsByVAX_LOTTable(vaers, \"PFIZER\\BIONTECH\")\n",
"batchCodeTable['VAX_LOT_PREFIX'] = batchCodeTable['VAX_LOT'].str[:2]\n", "batchCodeTable['VAX_LOT_PREFIX'] = batchCodeTable['VAX_LOT'].str[:2]\n",
"batchCodeTable = batchCodeTable.sort_values(by = 'VAX_LOT_PREFIX', ascending = True)\n", "batchCodeTable = batchCodeTable.sort_values(by = 'VAX_LOT_PREFIX', ascending = True)\n",
"twoLetters = re.compile(r'^[a-zA-Z]{2}')\n", "twoLetterPrefix = re.compile(r'^[a-zA-Z]{2}')\n",
"batchCodeTable = filterColumnOfDataFrameWithRegexp(dataFrame = batchCodeTable, column = 'VAX_LOT_PREFIX', regexp = twoLetters)\n", "batchCodeTable = filterColumnOfDataFrameWithRegexp(dataFrame = batchCodeTable, column = 'VAX_LOT_PREFIX', regexp = twoLetterPrefix)\n",
"batchCodeTable[batchCodeTable['VAX_LOT_PREFIX'].apply(lambda vax_lot_prefix: bool(twoLetters.match(vax_lot_prefix)))]\n",
"batchCodeTable = batchCodeTable[batchCodeTable['VAX_LOT_PREFIX'].isin(['EN', 'EP', 'ER', 'EW', 'FA', 'FC', 'FD', 'FE', 'FH'])]\n", "batchCodeTable = batchCodeTable[batchCodeTable['VAX_LOT_PREFIX'].isin(['EN', 'EP', 'ER', 'EW', 'FA', 'FC', 'FD', 'FE', 'FH'])]\n",
"batchCodeTable = batchCodeTable[batchCodeTable['ADRs'] > 400]\n", "batchCodeTable = batchCodeTable[batchCodeTable['ADRs'] > 400]\n",
"batchCodeTable" "batchCodeTable"