adding "Moderna Batches"

This commit is contained in:
frankknoll
2022-02-10 01:06:39 +01:00
parent e1c854e8c7
commit ee2c68bb50

View File

@@ -1226,6 +1226,73 @@
"\n",
"sns.boxplot(x = \"VAX_LOT_PREFIX\", y = \"ADRs\", data = batchCodeTable)"
]
},
{
"cell_type": "markdown",
"id": "731c27a5",
"metadata": {},
"source": [
"#### Moderna Batches"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "b4a9c489",
"metadata": {},
"outputs": [],
"source": [
"import re\n",
"\n",
"dataFrame = DataFrameFilter().filterByCovid19(vaers)\n",
"dataFrame = DataFrameFilter().filterBy(dataFrame, manufacturer = \"MODERNA\")\n",
"batchCodeTable = BatchCodeTableFactory._createSummationTableByVAX_LOT(dataFrame)[['ADRs']].reset_index()\n",
"modernaBatchCodePrefix = re.compile(r'^[0-9]{3}[a-zA-Z]')\n",
"batchCodeTable = batchCodeTable[batchCodeTable['VAX_LOT'].apply(lambda vax_lot: bool(modernaBatchCodePrefix.match(vax_lot)))]\n",
"batchCodeTable['CONCENTRATION'] = batchCodeTable['VAX_LOT'].str[3]\n",
"batchCodeTable = batchCodeTable.sort_values(by = 'CONCENTRATION', ascending = True)\n",
"batchCodeTable = batchCodeTable[batchCodeTable['ADRs'] > 400]\n",
"batchCodeTable"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "e26c9d85",
"metadata": {},
"outputs": [],
"source": [
"import seaborn as sns\n",
"\n",
"order = ['J', 'K', 'L', 'M', 'A', 'B', 'C', 'D', 'E', 'F', 'G', 'H']\n",
"\n",
"sns.set(rc = {'figure.figsize': (11.7, 8.27)})\n",
"sns.set_theme()\n",
"chart = sns.stripplot(x = \"CONCENTRATION\", y = \"ADRs\", data = batchCodeTable, order = order)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "d1de13c7",
"metadata": {},
"outputs": [],
"source": [
"sns.pointplot(x = \"CONCENTRATION\", y = \"ADRs\", data = batchCodeTable, estimator = np.mean, order = order)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "29ae8ca2",
"metadata": {},
"outputs": [],
"source": [
"import seaborn as sns\n",
"sns.set_theme(style = \"ticks\", palette = \"pastel\")\n",
"\n",
"sns.boxplot(x = \"CONCENTRATION\", y = \"ADRs\", data = batchCodeTable, order = order)"
]
}
],
"metadata": {