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refactoring

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frankknoll
2022-02-20 21:04:01 +01:00
parent 2618c1395e
commit e2bc81bce1
1 changed files with 9 additions and 12 deletions
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src/HowBadIsMyBatch.ipynb
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@@ -1464,8 +1464,8 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"def createAndSaveAndDisplayBatchCodeTableByCountry(internationalLotTableFactory, country, minADRsForLethality = None):\n", "def createAndSaveAndDisplayBatchCodeTableByCountry(createBatchCodeTable, country, minADRsForLethality = None):\n",
" batchCodeTable = internationalLotTableFactory.createBatchCodeTableByCountry(country)\n", " batchCodeTable = createBatchCodeTable(country)\n",
" batchCodeTable.index.set_names(\"Batch\", inplace = True)\n", " batchCodeTable.index.set_names(\"Batch\", inplace = True)\n",
" if minADRsForLethality is not None:\n", " if minADRsForLethality is not None:\n",
" batchCodeTable.loc[batchCodeTable['Adverse Reaction Reports'] < minADRsForLethality, ['Severe reports', 'Lethality']] = [np.nan, np.nan]\n", " batchCodeTable.loc[batchCodeTable['Adverse Reaction Reports'] < minADRsForLethality, ['Severe reports', 'Lethality']] = [np.nan, np.nan]\n",
@@ -1475,7 +1475,7 @@
"def createAndSaveAndDisplayBatchCodeTablesByCountry(vaers, countries, minADRsForLethality = None):\n", "def createAndSaveAndDisplayBatchCodeTablesByCountry(vaers, countries, minADRsForLethality = None):\n",
" internationalLotTableFactory = InternationalLotTableFactory(vaers)\n", " internationalLotTableFactory = InternationalLotTableFactory(vaers)\n",
" for country in countries:\n", " for country in countries:\n",
" createAndSaveAndDisplayBatchCodeTableByCountry(internationalLotTableFactory, country, minADRsForLethality)" " createAndSaveAndDisplayBatchCodeTableByCountry(lambda country: internationalLotTableFactory.createBatchCodeTableByCountry(country), country, minADRsForLethality)"
] ]
}, },
{ {
@@ -1533,8 +1533,8 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"internationalLotTableFactory = InternationalLotTableFactory(internationalVaers)\n", "globalBatchCodeTable = InternationalLotTableFactory(internationalVaers).createGlobalBatchCodeTable()\n",
"globalBatchCodeTable = internationalLotTableFactory.createGlobalBatchCodeTable()" "globalBatchCodeTable"
] ]
}, },
{ {
@@ -1544,13 +1544,10 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
" # FK-TODO: DRY with createAndSaveAndDisplayBatchCodeTableByCountry()\n", "createAndSaveAndDisplayBatchCodeTableByCountry(\n",
" minADRsForLethality = 100\n", " createBatchCodeTable = lambda country: globalBatchCodeTable,\n",
" globalBatchCodeTable.index.set_names(\"Batch\", inplace = True)\n", " country = 'Global',\n",
" if minADRsForLethality is not None:\n", " minADRsForLethality = 100)\n"
" globalBatchCodeTable.loc[globalBatchCodeTable['Adverse Reaction Reports'] < minADRsForLethality, ['Severe reports', 'Lethality']] = [np.nan, np.nan]\n",
" IOUtils.saveDataFrame(globalBatchCodeTable, '../docs/data/Global')\n",
" display('Global' + \":\", globalBatchCodeTable)\n"
] ]
}, },
{ {