francois/HowBadIsMyBatch
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

refactoring

Browse Source
This commit is contained in:
frankknoll
2022-01-25 10:50:14 +01:00
parent 17875bf89a
commit ce588d502a
2 changed files with 14 additions and 18 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
.gitignore vendored
View File

@@ -1,2 +1,4 @@
VAERS/
.ipynb_checkpoints/
VAERSDataUseGuide_en_September2021.pdf
Vaccine Lot Numbers Expiration (1).xlsx

26
HowBadIsMyBatch.ipynb
View File

@@ -24,22 +24,16 @@
" def read_csv(file):\n",
" return pd.read_csv(file, index_col='VAERS_ID', encoding='latin1', low_memory=False)\n",
" \n",
" def createPatients():\n",
" return pd.concat(\n",
" [\n",
" read_csv(\"VAERS/2021VAERSData/2021VAERSDATA.csv\"),\n",
" read_csv(\"VAERS/2022VAERSData/2022VAERSDATA.csv\")\n",
" ])\n",
" def createDataFrameForYear(year):\n",
" folder = \"VAERS/\" + year + \"VAERSData/\"\n",
" return pd.merge(\n",
" read_csv(folder + year + \"VAERSDATA.csv\"),\n",
" read_csv(folder + year + \"VAERSVAX.csv\"),\n",
" left_index=True,\n",
" right_index=True)\n",
" \n",
" def createVax(): \n",
" return pd.concat(\n",
" [\n",
" read_csv(\"VAERS/2021VAERSData/2021VAERSVAX.csv\"),\n",
" read_csv(\"VAERS/2022VAERSData/2022VAERSVAX.csv\")\n",
" ])\n",
"\n",
" df_patients_vax = pd.merge(createPatients(), createVax(), left_index=True, right_index=True)\n",
" return df_patients_vax[(df_patients_vax[\"VAX_TYPE\"] == \"COVID19\") & (df_patients_vax[\"VAX_MANU\"] == manufacturer)]"
" df = pd.concat([createDataFrameForYear(\"2021\"), createDataFrameForYear(\"2022\")])\n",
" return df[(df[\"VAX_TYPE\"] == \"COVID19\") & (df[\"VAX_MANU\"] == manufacturer)]"
]
},
{
@@ -96,7 +90,7 @@
{
"cell_type": "code",
"execution_count": null,
"id": "fdf2ab4b",
"id": "bb7b2963",
"metadata": {},
"outputs": [],
"source": [