formating
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@@ -7,10 +7,13 @@ class SymptomByBatchcodeTableFactory:
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def createSymptomByBatchcodeTable(VAERSVAX, VAERSSYMPTOMS):
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index_columns = SymptomByBatchcodeTableFactory._getIndexColumns(VAERSVAX)
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symptomColumn = 'SYMPTOM'
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return pd.merge(
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return (pd
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.merge(
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SymptomByBatchcodeTableFactory._get_VAERSVAX_WITH_VAX_LOTS(VAERSVAX, index_columns),
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SymptomByBatchcodeTableFactory._getSymptomsTable(VAERSSYMPTOMS, symptomColumn),
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on = 'VAERS_ID').set_index(index_columns)[[symptomColumn]]
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on = 'VAERS_ID')
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.set_index(index_columns)
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[[symptomColumn]])
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@staticmethod
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def _getIndexColumns(VAERSVAX):
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@@ -22,9 +25,12 @@ class SymptomByBatchcodeTableFactory:
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@staticmethod
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def _get_VAERSVAX_WITH_VAX_LOTS(VAERSVAX, index_columns):
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return pd.concat(
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return (pd
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.concat(
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[VAERSVAX, SymptomByBatchcodeTableFactory._getVaxLotsTable(VAERSVAX, index_columns)],
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axis='columns').reset_index().drop_duplicates(subset = ['VAERS_ID'] + index_columns)
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axis = 'columns')
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.reset_index()
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.drop_duplicates(subset = ['VAERS_ID'] + index_columns))
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@staticmethod
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def _getVaxLotsTable(VAERSVAX, index_columns):
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@@ -42,7 +48,8 @@ class SymptomByBatchcodeTableFactory:
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@staticmethod
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def _getSymptomsTable(VAERSSYMPTOMS, symptomColumn):
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return (pd.concat(
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return (pd
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.concat(
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[
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VAERSSYMPTOMS['SYMPTOM1'],
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VAERSSYMPTOMS['SYMPTOM2'],
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