francois/HowBadIsMyBatch
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refactoring

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frankknoll
2022-02-20 21:22:04 +01:00
parent e2bc81bce1
commit ca5c232c45
1 changed files with 15 additions and 32 deletions
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47
src/HowBadIsMyBatch.ipynb
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@@ -1464,18 +1464,17 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"def createAndSaveAndDisplayBatchCodeTableByCountry(createBatchCodeTable, country, minADRsForLethality = None):\n", "def createAndSaveBatchCodeTableForCountry(createBatchCodeTableForCountry, country, minADRsForLethality = None):\n",
" batchCodeTable = createBatchCodeTable(country)\n", " batchCodeTable = createBatchCodeTableForCountry(country)\n",
" batchCodeTable.index.set_names(\"Batch\", inplace = True)\n", " batchCodeTable.index.set_names(\"Batch\", inplace = True)\n",
" if minADRsForLethality is not None:\n", " if minADRsForLethality is not None:\n",
" batchCodeTable.loc[batchCodeTable['Adverse Reaction Reports'] < minADRsForLethality, ['Severe reports', 'Lethality']] = [np.nan, np.nan]\n", " batchCodeTable.loc[batchCodeTable['Adverse Reaction Reports'] < minADRsForLethality, ['Severe reports', 'Lethality']] = [np.nan, np.nan]\n",
" IOUtils.saveDataFrame(batchCodeTable, '../docs/data/' + country)\n", " IOUtils.saveDataFrame(batchCodeTable, '../docs/data/' + country)\n",
" display(country + \":\", batchCodeTable)\n", " display(country + \":\", batchCodeTable)\n",
"\n", "\n",
"def createAndSaveAndDisplayBatchCodeTablesByCountry(vaers, countries, minADRsForLethality = None):\n", "def createAndSaveBatchCodeTablesForCountries(createBatchCodeTableForCountry, countries, minADRsForLethality = None):\n",
" internationalLotTableFactory = InternationalLotTableFactory(vaers)\n",
" for country in countries:\n", " for country in countries:\n",
" createAndSaveAndDisplayBatchCodeTableByCountry(lambda country: internationalLotTableFactory.createBatchCodeTableByCountry(country), country, minADRsForLethality)" " createAndSaveBatchCodeTableForCountry(createBatchCodeTableForCountry, country, minADRsForLethality)"
] ]
}, },
{ {
@@ -1520,34 +1519,18 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"createAndSaveAndDisplayBatchCodeTablesByCountry(\n", "minADRsForLethality = 100\n",
" internationalVaers,\n", "internationalLotTableFactory = InternationalLotTableFactory(internationalVaers)\n",
" countries,\n", "\n",
" minADRsForLethality = 100)" "createAndSaveBatchCodeTablesForCountries(\n",
] " createBatchCodeTableForCountry = lambda country: internationalLotTableFactory.createBatchCodeTableByCountry(country),\n",
}, " countries = countries,\n",
{ " minADRsForLethality = minADRsForLethality)\n",
"cell_type": "code", "\n",
"execution_count": null, "createAndSaveBatchCodeTableForCountry(\n",
"id": "106c0d91", " createBatchCodeTableForCountry = lambda country: internationalLotTableFactory.createGlobalBatchCodeTable(),\n",
"metadata": {},
"outputs": [],
"source": [
"globalBatchCodeTable = InternationalLotTableFactory(internationalVaers).createGlobalBatchCodeTable()\n",
"globalBatchCodeTable"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "e75bd993",
"metadata": {},
"outputs": [],
"source": [
"createAndSaveAndDisplayBatchCodeTableByCountry(\n",
" createBatchCodeTable = lambda country: globalBatchCodeTable,\n",
" country = 'Global',\n", " country = 'Global',\n",
" minADRsForLethality = 100)\n" " minADRsForLethality = minADRsForLethality)\n"
] ]
}, },
{ {