Merge branch 'main' of https://github.com/KnollFrank/HowBadIsMyBatch

src/DrugsForPathologies/DrugDescriptionsForPathologiesPersister.py

@@ -0,0 +1,13 @@
+import shutil
+from IOUtils import IOUtils
+
+def saveDrugDescriptionsForPathologies(drugDescrByPathology, directory):
+    shutil.rmtree(directory, ignore_errors = True)
+    filenameByPathology = {}
+    i = 0
+    for pathology, drugDescr in drugDescrByPathology.items():
+        i += 1
+        filenameByPathology[pathology] = f'{i}'
+        drugDescr['PATHOLOGY'] = pathology
+        IOUtils.saveDictAsJson(drugDescr, f'{directory}/{i}.json')
+    return filenameByPathology    

src/DrugsForPathologies/HtmlUpdater.py

@@ -0,0 +1,28 @@
+from bs4 import BeautifulSoup
+from HtmlTransformerUtil import HtmlTransformerUtil
+from DateProvider import DateProvider
+from SymptomsCausedByVaccines.HtmlUtils import getOptionsWithDefaultOption
+from SymptomsCausedByVaccines.OptionsSetter import OptionsSetter
+
+
+def updateHtmlFile(filenameByPathology, htmlFile):
+    options = getOptionsWithDefaultOption(
+        defaultOptionText = 'Select Pathology',
+        values = list(filenameByPathology.keys()),
+        filenameByValue = filenameByPathology)
+    _saveOptions(
+        options = options,
+        htmlFile = htmlFile,
+        selectElementId = 'pathologySelect')
+
+
+def _saveOptions(options, htmlFile, selectElementId):
+    HtmlTransformerUtil().applySoupTransformerToFile(
+        file=htmlFile,
+        soupTransformer = lambda soup:
+            BeautifulSoup(
+                OptionsSetter().setOptions(
+                    html = str(soup),
+                    selectElementId = selectElementId,
+                    options = options),
+                'lxml'))

src/HowBadIsMyBatch.ipynb

@@ -608,9 +608,94 @@
   },
   {
    "cell_type": "markdown",
-   "id": "439c055f",
+   "id": "be72f509",
    "metadata": {},
-   "source": []
+   "source": [
+    "# Drugs for Pathologies"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "c8190125",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import pandas as pd\n",
+    "import os\n",
+    "from DrugsForPathologies.DrugDescriptionsForPathologiesPersister import saveDrugDescriptionsForPathologies\n",
+    "from DrugsForPathologies.HtmlUpdater import updateHtmlFile as updateDrugsForPathologiesHtmlFile\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "3f60c4f1",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def getDrugDescrByPathology(drugs4Pathologies):\n",
+    "    def drugsTable2drugDescr(drugsTable):\n",
+    "        drugDescr = drugsTable.to_dict('list')\n",
+    "        del drugDescr['PATHOLOGY']\n",
+    "        return drugDescr\n",
+    "    \n",
+    "    return drugs4Pathologies.groupby('PATHOLOGY').apply(drugsTable2drugDescr)\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "a092ecf7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def saveDrugDescriptionsForPathologiesAndUpdateHtmlFile(drugDescrByPathology, webAppBaseDir):\n",
+    "    filenameByPathology = saveDrugDescriptionsForPathologies(\n",
+    "        drugDescrByPathology = drugDescrByPathology,\n",
+    "        directory = os.path.normpath(webAppBaseDir + '/data/DrugDescriptionsForPathologies'))\n",
+    "    updateDrugsForPathologiesHtmlFile(\n",
+    "        filenameByPathology,\n",
+    "        htmlFile = os.path.normpath(webAppBaseDir + '/index.html'))\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "a416e3b7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "drugs4Pathologies  = pd.read_excel(\n",
+    "        io = 'data/1000-pathologies.xlsx',\n",
+    "        converters = {\n",
+    "            'PATHOLOGY': lambda text: text.strip(),\n",
+    "            'DRUG': lambda text: text.strip() })\n",
+    "drugs4Pathologies"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "1c0166e6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "drugDescrByPathology = getDrugDescrByPathology(drugs4Pathologies)\n",
+    "drugDescrByPathology"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7652a551",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "saveDrugDescriptionsForPathologiesAndUpdateHtmlFile(\n",
+    "    drugDescrByPathology = drugDescrByPathology,\n",
+    "    webAppBaseDir = os.path.normpath(os.getcwd() + '/../docs/DrugsForPathologies'))"
+   ]
   }
  ],
  "metadata": {

src/SymptomsCausedByVaccines/HtmlUtils.py

@@ -1,20 +1,20 @@
 import html
 
 def getVaccineOptions(vaccines, filenameByDrug, defaultOptionText):
-    return _getOptionsWithDefaultOption(
+    return getOptionsWithDefaultOption(
         defaultOptionText = defaultOptionText,
         values = vaccines,
         filenameByValue = filenameByDrug)
 
 
 def getSymptomOptions(symptoms, filenameBySymptom):
-    return _getOptionsWithDefaultOption(
+    return getOptionsWithDefaultOption(
         defaultOptionText = 'Select Symptom',
         values = symptoms,
         filenameByValue = filenameBySymptom)
 
 
-def _getOptionsWithDefaultOption(defaultOptionText, values, filenameByValue):
+def getOptionsWithDefaultOption(defaultOptionText, values, filenameByValue):
     return ['<option hidden disabled selected value>{defaultOptionText}</option>'.format(defaultOptionText = defaultOptionText)] + _getOptions(values, filenameByValue)
 
 

src/help.txt

@@ -4,6 +4,7 @@ Local:
 - http://www.howbadismybatch.info/VaccineDistributionByZipcode.html
 - http://www.howbadismybatch.info/SymptomsCausedByVaccines/index.html
 - http://www.howbadismybatch.info/SymptomsCausedByDrugs/index.html
+- http://www.howbadismybatch.info/DrugsForPathologies/index.html
 
 Live:
 - https://knollfrank.github.io/HowBadIsMyBatch/batchCodeTable.html
@@ -11,6 +12,7 @@ Live:
 - https://knollfrank.github.io/HowBadIsMyBatch/VaccineDistributionByZipcode.html
 - https://knollfrank.github.io/HowBadIsMyBatch/SymptomsCausedByVaccines/index.html
 - https://knollfrank.github.io/HowBadIsMyBatch/SymptomsCausedByDrugs/index.html
+- https://knollfrank.github.io/HowBadIsMyBatch/DrugsForPathologies/index.html
 
 jupyter notebook