francois/HowBadIsMyBatch
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refactoring

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frankknoll
2022-01-31 20:47:44 +01:00
parent ce981220d1
commit c36f60d0db
1 changed files with 11 additions and 5 deletions
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16
HowBadIsMyBatch.ipynb
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@@ -45,7 +45,10 @@
" }\n",
"\n",
"def readVaersDescrs(dataDir, years):\n",
" return [readVaersDescr(dataDir, year) for year in years]\n"
" return [readVaersDescr(dataDir, year) for year in years]\n",
"\n",
"def readAllVaersDescrs(dataDir):\n",
" return readVaersDescrs(dataDir, [\"2021\", \"2022\"])"
]
},
{
@@ -65,7 +68,7 @@
" validate = 'one_to_many')\n",
"\n",
"def createDataFrameFromDescrs(vaersDescrs):\n",
" dataFrames = map(createDataFrameFromDescr, vaersDescrs)\n",
" dataFrames = [createDataFrameFromDescr(vaersDescr) for vaersDescr in vaersDescrs]\n",
" return pd.concat(dataFrames)\n"
]
},
@@ -85,8 +88,11 @@
"def createAndFilterDataFrameFromDescrs(vaersDescrs, manufacturer, dose):\n",
" return filterDataFrame(createDataFrameFromDescrs(vaersDescrs), manufacturer = manufacturer, dose = dose)\n",
"\n",
"def filterDataFrameForSevereEffects(df, dose):\n",
" return filterDataFrame(df, dose = dose)\n",
"\n",
"def createDataFrameSevereEffectsFromDescrs(vaersDescrs, dose):\n",
" return filterDataFrame(createDataFrameFromDescrs(vaersDescrs), dose = dose)"
" return filterDataFrameForSevereEffects(createDataFrameFromDescrs(vaersDescrs), dose = dose)"
]
},
{
@@ -97,10 +103,10 @@
"outputs": [],
"source": [
"def createAndFilterDataFrameFromFiles(dataDir, manufacturer, dose):\n",
" return createAndFilterDataFrameFromDescrs(readVaersDescrs(dataDir, [\"2021\", \"2022\"]), manufacturer, dose)\n",
" return createAndFilterDataFrameFromDescrs(readAllVaersDescrs(dataDir), manufacturer, dose)\n",
"\n",
"def createDataFrameSevereEffectsFromFiles(dataDir, dose):\n",
" return createDataFrameSevereEffectsFromDescrs(readVaersDescrs(dataDir, [\"2021\", \"2022\"]), dose)"
" return createDataFrameSevereEffectsFromDescrs(readAllVaersDescrs(dataDir), dose)"
]
},
{