francois/HowBadIsMyBatch
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refactoring

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frankknoll
2022-01-31 20:47:44 +01:00
parent ce981220d1
commit c36f60d0db
1 changed files with 11 additions and 5 deletions
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HowBadIsMyBatch.ipynb
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@@ -45,7 +45,10 @@
" }\n", " }\n",
"\n", "\n",
"def readVaersDescrs(dataDir, years):\n", "def readVaersDescrs(dataDir, years):\n",
" return [readVaersDescr(dataDir, year) for year in years]\n" " return [readVaersDescr(dataDir, year) for year in years]\n",
"\n",
"def readAllVaersDescrs(dataDir):\n",
" return readVaersDescrs(dataDir, [\"2021\", \"2022\"])"
] ]
}, },
{ {
@@ -65,7 +68,7 @@
" validate = 'one_to_many')\n", " validate = 'one_to_many')\n",
"\n", "\n",
"def createDataFrameFromDescrs(vaersDescrs):\n", "def createDataFrameFromDescrs(vaersDescrs):\n",
" dataFrames = map(createDataFrameFromDescr, vaersDescrs)\n", " dataFrames = [createDataFrameFromDescr(vaersDescr) for vaersDescr in vaersDescrs]\n",
" return pd.concat(dataFrames)\n" " return pd.concat(dataFrames)\n"
] ]
}, },
@@ -85,8 +88,11 @@
"def createAndFilterDataFrameFromDescrs(vaersDescrs, manufacturer, dose):\n", "def createAndFilterDataFrameFromDescrs(vaersDescrs, manufacturer, dose):\n",
" return filterDataFrame(createDataFrameFromDescrs(vaersDescrs), manufacturer = manufacturer, dose = dose)\n", " return filterDataFrame(createDataFrameFromDescrs(vaersDescrs), manufacturer = manufacturer, dose = dose)\n",
"\n", "\n",
"def filterDataFrameForSevereEffects(df, dose):\n",
" return filterDataFrame(df, dose = dose)\n",
"\n",
"def createDataFrameSevereEffectsFromDescrs(vaersDescrs, dose):\n", "def createDataFrameSevereEffectsFromDescrs(vaersDescrs, dose):\n",
" return filterDataFrame(createDataFrameFromDescrs(vaersDescrs), dose = dose)" " return filterDataFrameForSevereEffects(createDataFrameFromDescrs(vaersDescrs), dose = dose)"
] ]
}, },
{ {
@@ -97,10 +103,10 @@
"outputs": [], "outputs": [],
"source": [ "source": [
"def createAndFilterDataFrameFromFiles(dataDir, manufacturer, dose):\n", "def createAndFilterDataFrameFromFiles(dataDir, manufacturer, dose):\n",
" return createAndFilterDataFrameFromDescrs(readVaersDescrs(dataDir, [\"2021\", \"2022\"]), manufacturer, dose)\n", " return createAndFilterDataFrameFromDescrs(readAllVaersDescrs(dataDir), manufacturer, dose)\n",
"\n", "\n",
"def createDataFrameSevereEffectsFromFiles(dataDir, dose):\n", "def createDataFrameSevereEffectsFromFiles(dataDir, dose):\n",
" return createDataFrameSevereEffectsFromDescrs(readVaersDescrs(dataDir, [\"2021\", \"2022\"]), dose)" " return createDataFrameSevereEffectsFromDescrs(readAllVaersDescrs(dataDir), dose)"
] ]
}, },
{ {