refactoring

src/HowBadIsMyBatch.ipynb

@@ -182,6 +182,7 @@
     "    def createSummationTable(\n",
     "        groupBy,\n",
     "        columnNameMappingsDict = {\n",
+    "                # FK-TODO: rename \"Total Number of Adverse Reaction Reports\" to \"Adverse Reaction Reports\" everywhere\n",
     "                \"DIED_size\": \"Total Number of Adverse Reaction Reports\",\n",
     "                \"DIED_sum\": \"Deaths\",\n",
     "                \"L_THREAT_sum\": \"Life Threatening Illnesses\",\n",
@@ -1262,6 +1263,8 @@
    "outputs": [],
    "source": [
     "def saveBatchCodeTable(vaers, file):\n",
+    "    # FK-TODO: show \"Sever Reports\"\n",
+    "    # FK-TODO: show combination of ALL doses\n",
     "    batchCodeTable = BatchCodeTableFactory.createBatchCodeTable(vaers, dose = '1', minADRsForLethality = 100)\n",
     "    batchCodeTable.index.set_names(\"Batch\", inplace = True)\n",
     "    display(batchCodeTable)\n",

src/help.txt

@@ -45,4 +45,6 @@ u039k20a
 039K20A, 011L20
 
 
-df[df.index.duplicated(False)].to_excel('results/pfizer_duplicates.xlsx')
+df[df.index.duplicated(False)].to_excel('results/pfizer_duplicates.xlsx')
+
+http://www.howbadismybatch.info/internationalBatchCodeTables.html