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renaming columns

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frankknoll
2022-02-15 21:04:10 +01:00
parent f8b3b8915f
commit bcacc211f6
3 changed files with 11 additions and 11 deletions
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8
batchCodeTable.html
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@@ -20,7 +20,7 @@
'Disabilities': 3, 'Disabilities': 3,
'Life Threatening Illnesses': 4, 'Life Threatening Illnesses': 4,
'Company': 5, 'Company': 5,
'Lethality (%)': 6 'Lethality': 6
}; };
$('#batchCodeTable').DataTable( $('#batchCodeTable').DataTable(
{ {
@@ -46,7 +46,7 @@
columnIndex['Disabilities'], columnIndex['Disabilities'],
columnIndex['Life Threatening Illnesses'], columnIndex['Life Threatening Illnesses'],
columnIndex['Company'], columnIndex['Company'],
columnIndex['Lethality (%)'] columnIndex['Lethality']
] ]
}, },
{ {
@@ -54,7 +54,7 @@
const lethality = parseFloat(data); const lethality = parseFloat(data);
return !isNaN(lethality) ? lethality.toFixed(2) + " %" : ''; return !isNaN(lethality) ? lethality.toFixed(2) + " %" : '';
}, },
targets: [columnIndex['Lethality (%)']] targets: [columnIndex['Lethality']]
} }
] ]
}); });
@@ -87,7 +87,7 @@
<th>Disabilities</th> <th>Disabilities</th>
<th>Life Threatening Illnesses</th> <th>Life Threatening Illnesses</th>
<th>Company</th> <th>Company</th>
<th>Lethality (%)</th> <th>Lethality</th>
</tr> </tr>
</thead> </thead>
</table> </table>

2
data/batchCodeTable.json
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File diff suppressed because one or more lines are too long

12
src/HowBadIsMyBatch.ipynb
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@@ -239,10 +239,10 @@
" 'Disabilities',\n", " 'Disabilities',\n",
" 'Life Threatening Illnesses',\n", " 'Life Threatening Illnesses',\n",
" 'Company',\n", " 'Company',\n",
" 'Lethality (%)'\n", " 'Lethality'\n",
" ]]\n", " ]]\n",
" if minADRsForLethality is not None:\n", " if minADRsForLethality is not None:\n",
" batchCodeTable.loc[batchCodeTable['Total Number of Adverse Reaction Reports'] < minADRsForLethality, 'Lethality (%)'] = np.nan\n", " batchCodeTable.loc[batchCodeTable['Total Number of Adverse Reaction Reports'] < minADRsForLethality, 'Lethality'] = np.nan\n",
" return batchCodeTable\n", " return batchCodeTable\n",
"\n", "\n",
" # create table from https://www.howbadismybatch.com/combined.html\n", " # create table from https://www.howbadismybatch.com/combined.html\n",
@@ -264,7 +264,7 @@
" @staticmethod\n", " @staticmethod\n",
" def _createSummationTableByVAX_LOT(dataFrame):\n", " def _createSummationTableByVAX_LOT(dataFrame):\n",
" batchCodeTable = SummationTableFactory.createSummationTable(dataFrame.groupby('VAX_LOT'))\n", " batchCodeTable = SummationTableFactory.createSummationTable(dataFrame.groupby('VAX_LOT'))\n",
" batchCodeTable['Lethality (%)'] = batchCodeTable['Deaths'] / batchCodeTable['Total Number of Adverse Reaction Reports'] * 100\n", " batchCodeTable['Lethality'] = batchCodeTable['Deaths'] / batchCodeTable['Total Number of Adverse Reaction Reports'] * 100\n",
" batchCodeTable = batchCodeTable[\n", " batchCodeTable = batchCodeTable[\n",
" [\n", " [\n",
" 'Total Number of Adverse Reaction Reports',\n", " 'Total Number of Adverse Reaction Reports',\n",
@@ -273,7 +273,7 @@
" 'Life Threatening Illnesses',\n", " 'Life Threatening Illnesses',\n",
" 'Hospitalisations',\n", " 'Hospitalisations',\n",
" 'Emergency Room or Doctor Visits',\n", " 'Emergency Room or Doctor Visits',\n",
" 'Lethality (%)'\n", " 'Lethality'\n",
" ]]\n", " ]]\n",
" batchCodeTable = batchCodeTable.sort_values(by = 'Total Number of Adverse Reaction Reports', ascending = False)\n", " batchCodeTable = batchCodeTable.sort_values(by = 'Total Number of Adverse Reaction Reports', ascending = False)\n",
" return BatchCodeTableFactory._addCompanyColumn(batchCodeTable, BatchCodeTableFactory._createCompanyByBatchCodeTable(dataFrame))\n", " return BatchCodeTableFactory._addCompanyColumn(batchCodeTable, BatchCodeTableFactory._createCompanyByBatchCodeTable(dataFrame))\n",
@@ -845,7 +845,7 @@
" 'Disabilities': [2, 0],\n", " 'Disabilities': [2, 0],\n",
" 'Life Threatening Illnesses': [0, 0],\n", " 'Life Threatening Illnesses': [0, 0],\n",
" 'Company': ['MODERNA', 'MODERNA'],\n", " 'Company': ['MODERNA', 'MODERNA'],\n",
" 'Lethality (%)': [0/2 * 100, np.nan]\n", " 'Lethality': [0/2 * 100, np.nan]\n",
" },\n", " },\n",
" index = pd.Index(['025L20A', '037K20A'], name = 'VAX_LOT'))\n", " index = pd.Index(['025L20A', '037K20A'], name = 'VAX_LOT'))\n",
" assert_frame_equal(batchCodeTable, batchCodeTableExpected, check_dtype = False)\n", " assert_frame_equal(batchCodeTable, batchCodeTableExpected, check_dtype = False)\n",
@@ -870,7 +870,7 @@
" 'Disabilities': [2, 0],\n", " 'Disabilities': [2, 0],\n",
" 'Life Threatening Illnesses': [0, 0],\n", " 'Life Threatening Illnesses': [0, 0],\n",
" 'Company': ['MODERNA', 'MODERNA'],\n", " 'Company': ['MODERNA', 'MODERNA'],\n",
" 'Lethality (%)': [0/2 * 100, 1/1 * 100]\n", " 'Lethality': [0/2 * 100, 1/1 * 100]\n",
" },\n", " },\n",
" index = pd.Index(['025L20A', '037K20A'], name = 'VAX_LOT'))\n", " index = pd.Index(['025L20A', '037K20A'], name = 'VAX_LOT'))\n",
" assert_frame_equal(batchCodeTable, batchCodeTableExpected, check_dtype = False)\n" " assert_frame_equal(batchCodeTable, batchCodeTableExpected, check_dtype = False)\n"