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frankknoll
2023-01-23 09:30:04 +01:00
parent d8b55ce00a
commit ada606a61f
2 changed files with 12 additions and 9 deletions
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19
src/SymptomByBatchcodeTableFactory.py
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@@ -42,14 +42,17 @@ class SymptomByBatchcodeTableFactory:
@staticmethod @staticmethod
def _getSymptomsTable(VAERSSYMPTOMS, symptomColumn): def _getSymptomsTable(VAERSSYMPTOMS, symptomColumn):
return pd.concat( return (pd.concat(
[ [
VAERSSYMPTOMS['SYMPTOM1'], VAERSSYMPTOMS['SYMPTOM1'],
VAERSSYMPTOMS['SYMPTOM2'], VAERSSYMPTOMS['SYMPTOM2'],
VAERSSYMPTOMS['SYMPTOM3'], VAERSSYMPTOMS['SYMPTOM3'],
VAERSSYMPTOMS['SYMPTOM4'], VAERSSYMPTOMS['SYMPTOM4'],
VAERSSYMPTOMS['SYMPTOM5'] VAERSSYMPTOMS['SYMPTOM5']
]).dropna().to_frame(name = symptomColumn).reset_index() ])
.dropna()
.to_frame(name = symptomColumn)
.reset_index())
def fillLsts(lsts, desiredLen, fillValue): def fillLsts(lsts, desiredLen, fillValue):
return [fillLst(lst, desiredLen, fillValue) for lst in lsts] return [fillLst(lst, desiredLen, fillValue) for lst in lsts]

2
src/SymptomHistogramByBatchcodeTableFactory.py
View File

@@ -5,4 +5,4 @@ class SymptomHistogramByBatchcodeTableFactory:
return (symptomByBatchcodeTable return (symptomByBatchcodeTable
.groupby(symptomByBatchcodeTable.index.names) .groupby(symptomByBatchcodeTable.index.names)
['SYMPTOM'].value_counts() ['SYMPTOM'].value_counts()
.to_frame('SYMPTOM_COUNT_BY_VAX_LOT')) .to_frame(name = 'SYMPTOM_COUNT_BY_VAX_LOT'))