starting Symptoms caused by COVID Lots

src/HowBadIsMyBatch.ipynb

@@ -539,6 +539,104 @@
     "    vaccines = list(prrByVaccineAndSymptom.index),\n",
     "    htmlFile = \"../docs/SymptomsCausedByVaccines/index.html\")"
    ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Symptoms caused by COVID Lots"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "prrByLotAndSymptom = pd.read_excel(\n",
+    "        io = 'data/symcolumns500.xlsx',\n",
+    "        index_col = 'VAX_LOT')\n",
+    "prrByLotAndSymptom\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "prrByLotBySymptom = PrrSeriesFactory.getPrrByVaccineBySymptom(prrByLotAndSymptom)\n",
+    "prrByLotBySymptom"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "prrBySymptomByLot = PrrSeriesFactory.getPrrBySymptomByVaccine(prrByLotAndSymptom)\n",
+    "prrBySymptomByLot"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "prrByLotBySymptomWithoutZeroPrrs = PrrSeriesTransformer.filterByNonZeroPrrs(prrByLotBySymptom)\n",
+    "prrByLotBySymptomWithoutZeroPrrs"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "prrBySymptomByLotWithHighPrrs = PrrSeriesTransformer.filterByHighPrrs(prrBySymptomByLot)\n",
+    "prrBySymptomByLotWithHighPrrs"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "saveProportionalReportingRatios(\n",
+    "    prrByLotBySymptomWithoutZeroPrrs,\n",
+    "    directory = os.path.normpath(os.getcwd() + '/../docs/data/SymptomsCausedByCOVIDLots/ProportionalReportingRatios/symptoms'))"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "saveProportionalReportingRatios(\n",
+    "    prrBySymptomByLotWithHighPrrs,\n",
+    "    directory = os.path.normpath(os.getcwd() + '/../docs/data/SymptomsCausedByCOVIDLots/ProportionalReportingRatios/vaccines'))"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "updateHtmlFile(\n",
+    "    symptoms = list(prrByLotAndSymptom.columns),\n",
+    "    vaccines = list(prrByLotAndSymptom.index),\n",
+    "    htmlFile = \"../docs/SymptomsCausedByCOVIDLots/index.html\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": []
   }
  ],
  "metadata": {