diff --git a/.gitignore b/.gitignore index 0bad67699c8..45f4a9560b8 100644 --- a/.gitignore +++ b/.gitignore @@ -3,5 +3,5 @@ src/VAERS/ .history/ src/config/ src/results/ -data/*.xlsx -data/*.html +docs/data/*.xlsx +docs/data/*.html diff --git a/docs/batchCodeTable.html b/docs/batchCodeTable.html index 29b84f192f0..ca1abbc20a6 100644 --- a/docs/batchCodeTable.html +++ b/docs/batchCodeTable.html @@ -15,7 +15,7 @@ function loadBatchCodeTable() { const columnIndex = { 'Batch': 0, - 'Total Number of Adverse Reaction Reports': 1, + 'Adverse Reaction Reports': 1, 'Deaths': 2, 'Disabilities': 3, 'Life Threatening Illnesses': 4, @@ -35,13 +35,13 @@ }, processing: true, deferRender: true, - order: [[columnIndex['Total Number of Adverse Reaction Reports'], "desc"]], + order: [[columnIndex['Adverse Reaction Reports'], "desc"]], columnDefs: [ { searchable: false, targets: [ - columnIndex['Total Number of Adverse Reaction Reports'], + columnIndex['Adverse Reaction Reports'], columnIndex['Deaths'], 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Disabilities Life Threatening Illnesses diff --git a/docs/data/Montenegro.json b/docs/data/Montenegro.json index 33d5fdc6c26..4fcdab5328d 100644 --- a/docs/data/Montenegro.json +++ b/docs/data/Montenegro.json @@ -1 +1 @@ -{"columns":["Batch","Total Number of Adverse Reaction Reports","Deaths","Disabilities","Life Threatening Illnesses","Company","Severe reports","Lethality"],"data":[["FH8469",1,0,0,0,"PFIZER\\BIONTECH",null,null],["FJ5782",1,0,0,0,"PFIZER\\BIONTECH",null,null],["PCB0001",1,0,0,0,"PFIZER\\BIONTECH",null,null]]} \ No newline at end of file +{"columns":["Batch","Adverse Reaction Reports","Deaths","Disabilities","Life Threatening Illnesses","Company","Severe reports","Lethality"],"data":[["FH8469",1,0,0,0,"PFIZER\\BIONTECH",null,null],["FJ5782",1,0,0,0,"PFIZER\\BIONTECH",null,null],["PCB0001",1,0,0,0,"PFIZER\\BIONTECH",null,null]]} \ No newline at end of file diff --git a/docs/data/Montenegro.xlsx b/docs/data/Montenegro.xlsx index b4bc37c319c..7b4c07adcc0 100644 Binary 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differ diff --git a/docs/data/Switzerland.html b/docs/data/Switzerland.html index 662ad3d0bbd..0b8f8c26558 100644 --- a/docs/data/Switzerland.html +++ b/docs/data/Switzerland.html @@ -2,7 +2,7 @@ Batch - Total Number of Adverse Reaction Reports + Adverse Reaction Reports Deaths Disabilities Life Threatening Illnesses diff --git a/docs/data/Switzerland.json b/docs/data/Switzerland.json index b4d3fe3f309..b5907b491d7 100644 --- a/docs/data/Switzerland.json +++ b/docs/data/Switzerland.json @@ -1 +1 @@ -{"columns":["Batch","Total Number of Adverse Reaction Reports","Deaths","Disabilities","Life Threatening Illnesses","Company","Severe reports","Lethality"],"data":[["0004246",1,1,0,0,"MODERNA",null,null],["EW6126",1,1,0,0,"PFIZER\\BIONTECH",null,null],["30007449",1,0,0,1,"PFIZER\\BIONTECH",null,null],["30016 56",1,0,0,1,"MODERNA",null,null],["EJ6795",1,1,0,0,"PFIZER\\BIONTECH",null,null],["300042450",1,1,0,0,"MODERNA",null,null],["3000424 60",1,1,0,0,"MODERNA",null,null],["G 26761 A; 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MANUFACTURER",null],["210076",1,0,0,0,"JANSSEN",null],["210093",1,0,0,0,"JANSSEN",null],["210103-122",1,0,0,0,"MODERNA",null],["210120031",1,0,0,0,"MODERNA",null],["210125-171",1,0,0,0,"MODERNA",null],["210129",1,0,0,0,"JANSSEN",null],["210414-015",1,1,0,0,"MODERNA",null],["210129-106",1,0,0,0,"MODERNA",null],["2101713",1,0,0,0,"MODERNA",null],["2101734",1,0,0,0,"MODERNA",null],["2101809745",1,0,0,0,"PFIZER\\BIONTECH",null],["210182",1,0,0,0,"UNKNOWN MANUFACTURER",null],["2101886",1,0,0,0,"MODERNA",null],["2101912",1,0,0,0,"MODERNA",null],["210212",1,1,0,0,"UNKNOWN MANUFACTURER",null],["210281",1,0,0,0,"UNKNOWN MANUFACTURER",null],["210310-029",1,0,0,0,"PFIZER\\BIONTECH",null],["210312-004",1,0,0,0,"MODERNA",null],["210312-012",1,0,0,0,"MODERNA",null],["210331-093",1,0,0,0,"PFIZER\\BIONTECH",null],["210377",1,0,0,0,"UNKNOWN MANUFACTURER",null],["\u00c2K4244",1,0,0,0,"PFIZER\\BIONTECH",null]]} \ No newline at end of file diff --git a/docs/data/batchCodeTable.xlsx b/docs/data/batchCodeTable.xlsx index cbcdc3dcdea..f962b2b8dc5 100644 Binary files a/docs/data/batchCodeTable.xlsx and b/docs/data/batchCodeTable.xlsx differ diff --git a/docs/internationalBatchCodeTables.html b/docs/internationalBatchCodeTables.html index 2b940583e3f..995b5334ec7 100644 --- a/docs/internationalBatchCodeTables.html +++ b/docs/internationalBatchCodeTables.html @@ -15,7 +15,7 @@ function createEmptyBatchCodeTable() { const columnIndex = { 'Batch': 0, - 'Total Number of Adverse Reaction Reports': 1, + 'Adverse Reaction Reports': 1, 'Deaths': 2, 'Disabilities': 3, 'Life Threatening Illnesses': 4, @@ -35,13 +35,13 @@ }, processing: true, deferRender: true, - order: [[columnIndex['Total Number of Adverse Reaction Reports'], "desc"]], + order: [[columnIndex['Adverse Reaction Reports'], "desc"]], columnDefs: [ { searchable: false, targets: [ - columnIndex['Total Number of Adverse Reaction Reports'], + columnIndex['Adverse Reaction Reports'], columnIndex['Deaths'], columnIndex['Disabilities'], columnIndex['Life Threatening Illnesses'], @@ -268,7 +268,7 @@ Batch - Total Number of Adverse Reaction Reports + Adverse Reaction Reports Deaths Disabilities Life Threatening Illnesses diff --git a/src/HowBadIsMyBatch.ipynb b/src/HowBadIsMyBatch.ipynb index 57d35ede442..65f1e88deb2 100644 --- a/src/HowBadIsMyBatch.ipynb +++ b/src/HowBadIsMyBatch.ipynb @@ -182,8 +182,7 @@ " def createSummationTable(\n", " groupBy,\n", " columnNameMappingsDict = {\n", - " # FK-TODO: rename \"Total Number of Adverse Reaction Reports\" to \"Adverse Reaction Reports\" everywhere\n", - " \"DIED_size\": \"Total Number of Adverse Reaction Reports\",\n", + " \"DIED_size\": \"Adverse Reaction Reports\",\n", " \"DIED_sum\": \"Deaths\",\n", " \"L_THREAT_sum\": \"Life Threatening Illnesses\",\n", " \"DISABLE_sum\": \"Disabilities\",\n", @@ -207,17 +206,17 @@ " summationTable = SummationTableFactory.createSummationTable(\n", " dataFrame,\n", " columnNameMappingsDict = {\n", - " \"DIED_size\": \"Total Number of Adverse Reaction Reports\",\n", + " \"DIED_size\": \"Adverse Reaction Reports\",\n", " \"DIED_sum\": \"Deaths\",\n", " \"L_THREAT_sum\": \"Life Threatening Illnesses\",\n", " \"DISABLE_sum\": \"Disabilities\",\n", " \"SEVERE_sum\": \"Severities\"\n", " })\n", - " summationTable['Severe reports'] = summationTable['Severities'] / summationTable['Total Number of Adverse Reaction Reports'] * 100\n", - " summationTable['Lethality'] = summationTable['Deaths'] / summationTable['Total Number of Adverse Reaction Reports'] * 100\n", + " summationTable['Severe reports'] = summationTable['Severities'] / summationTable['Adverse Reaction Reports'] * 100\n", + " summationTable['Lethality'] = summationTable['Deaths'] / summationTable['Adverse Reaction Reports'] * 100\n", " summationTable = summationTable[\n", " [\n", - " 'Total Number of Adverse Reaction Reports',\n", + " 'Adverse Reaction Reports',\n", " 'Deaths',\n", " 'Disabilities',\n", " 'Life Threatening Illnesses',\n", @@ -248,7 +247,7 @@ " dataFrame = DataFrameFilter().filterBy(dataFrame, dose = dose)\n", " batchCodeTable = BatchCodeTableFactory._createSummationTableByVAX_LOT(dataFrame)[\n", " [\n", - " 'Total Number of Adverse Reaction Reports',\n", + " 'Adverse Reaction Reports',\n", " 'Deaths',\n", " 'Disabilities',\n", " 'Life Threatening Illnesses',\n", @@ -256,7 +255,7 @@ " 'Lethality'\n", " ]]\n", " if minADRsForLethality is not None:\n", - " batchCodeTable.loc[batchCodeTable['Total Number of Adverse Reaction Reports'] < minADRsForLethality, 'Lethality'] = np.nan\n", + " batchCodeTable.loc[batchCodeTable['Adverse Reaction Reports'] < minADRsForLethality, 'Lethality'] = np.nan\n", " return batchCodeTable\n", "\n", " # create table from https://www.howbadismybatch.com/combined.html\n", @@ -266,7 +265,7 @@ " dataFrame = DataFrameFilter().filterBy(dataFrame, dose = dose)\n", " return BatchCodeTableFactory._createSummationTableByVAX_LOT(dataFrame)[\n", " [\n", - " 'Total Number of Adverse Reaction Reports', \n", + " 'Adverse Reaction Reports', \n", " 'Deaths',\n", " 'Disabilities',\n", " 'Life Threatening Illnesses',\n", @@ -278,10 +277,10 @@ " @staticmethod\n", " def _createSummationTableByVAX_LOT(dataFrame):\n", " batchCodeTable = SummationTableFactory.createSummationTable(dataFrame.groupby('VAX_LOT'))\n", - " batchCodeTable['Lethality'] = batchCodeTable['Deaths'] / batchCodeTable['Total Number of Adverse Reaction Reports'] * 100\n", + " batchCodeTable['Lethality'] = batchCodeTable['Deaths'] / batchCodeTable['Adverse Reaction Reports'] * 100\n", " batchCodeTable = batchCodeTable[\n", " [\n", - " 'Total Number of Adverse Reaction Reports',\n", + " 'Adverse Reaction Reports',\n", " 'Deaths',\n", " 'Disabilities',\n", " 'Life Threatening Illnesses',\n", @@ -289,7 +288,7 @@ " 'Emergency Room or Doctor Visits',\n", " 'Lethality'\n", " ]]\n", - " batchCodeTable = batchCodeTable.sort_values(by = 'Total Number of Adverse Reaction Reports', ascending = False)\n", + " batchCodeTable = batchCodeTable.sort_values(by = 'Adverse Reaction Reports', ascending = False)\n", " return CompanyColumnAdder.addCompanyColumn(batchCodeTable, CompanyColumnAdder.createCompanyByBatchCodeTable(dataFrame))\n" ] }, @@ -425,7 +424,7 @@ " batchCodeTable = CompanyColumnAdder.addCompanyColumn(batchCodeTable, CompanyColumnAdder.createCompanyByBatchCodeTable(dataFrame))\n", " batchCodeTable = batchCodeTable[\n", " [\n", - " 'Total Number of Adverse Reaction Reports',\n", + " 'Adverse Reaction Reports',\n", " 'Deaths',\n", " 'Disabilities',\n", " 'Life Threatening Illnesses',\n", @@ -868,7 +867,7 @@ " # Then\n", " batchCodeTableExpected = pd.DataFrame(\n", " data = {\n", - " 'Total Number of Adverse Reaction Reports': [1, 1],\n", + " 'Adverse Reaction Reports': [1, 1],\n", " 'Deaths': [0, 1],\n", " 'Disabilities': [1, 0],\n", " 'Life Threatening Illnesses': [0, 1],\n", @@ -967,12 +966,12 @@ " # Then\n", " batchCodeTableExpected = pd.DataFrame(\n", " data = {\n", - " 'Total Number of Adverse Reaction Reports': [2, 1],\n", - " 'Deaths': [0, 1],\n", - " 'Disabilities': [2, 0],\n", - " 'Life Threatening Illnesses': [0, 0],\n", - " 'Company': ['MODERNA', 'MODERNA'],\n", - " 'Lethality': [0/2 * 100, np.nan]\n", + " 'Adverse Reaction Reports': [2, 1],\n", + " 'Deaths': [0, 1],\n", + " 'Disabilities': [2, 0],\n", + " 'Life Threatening Illnesses': [0, 0],\n", + " 'Company': ['MODERNA', 'MODERNA'],\n", + " 'Lethality': [0/2 * 100, np.nan]\n", " },\n", " index = pd.Index(['025L20A', '037K20A'], name = 'VAX_LOT'))\n", " assert_frame_equal(batchCodeTable, batchCodeTableExpected, check_dtype = False)\n", @@ -992,12 +991,12 @@ " # Then\n", " batchCodeTableExpected = pd.DataFrame(\n", " data = {\n", - " 'Total Number of Adverse Reaction Reports': [2, 1],\n", - " 'Deaths': [0, 1],\n", - " 'Disabilities': [2, 0],\n", - " 'Life Threatening Illnesses': [0, 0],\n", - " 'Company': ['MODERNA', 'MODERNA'],\n", - " 'Lethality': [0/2 * 100, 1/1 * 100]\n", + " 'Adverse Reaction Reports': [2, 1],\n", + " 'Deaths': [0, 1],\n", + " 'Disabilities': [2, 0],\n", + " 'Life Threatening Illnesses': [0, 0],\n", + " 'Company': ['MODERNA', 'MODERNA'],\n", + " 'Lethality': [0/2 * 100, 1/1 * 100]\n", " },\n", " index = pd.Index(['025L20A', '037K20A'], name = 'VAX_LOT'))\n", " assert_frame_equal(batchCodeTable, batchCodeTableExpected, check_dtype = False)\n" @@ -1036,12 +1035,12 @@ " doseTable,\n", " pd.DataFrame(\n", " data = {\n", - " 'Total Number of Adverse Reaction Reports': [2, 1],\n", - " 'Deaths': [2, 1],\n", - " 'Disabilities': [1, 0],\n", - " 'Life Threatening Illnesses': [1, 0],\n", - " 'Severe reports': [2/2 * 100, 1/1 * 100],\n", - " 'Lethality': [2/2 * 100, 1/1 * 100]\n", + " 'Adverse Reaction Reports': [2, 1],\n", + " 'Deaths': [2, 1],\n", + " 'Disabilities': [1, 0],\n", + " 'Life Threatening Illnesses': [1, 0],\n", + " 'Severe reports': [2/2 * 100, 1/1 * 100],\n", + " 'Lethality': [2/2 * 100, 1/1 * 100]\n", " },\n", " index = pd.Index(['1', '2'], dtype = \"string\", name = 'Dose')))\n", " \n", @@ -1068,12 +1067,12 @@ " doseByMonthTable,\n", " pd.DataFrame(\n", " data = {\n", - " 'Total Number of Adverse Reaction Reports': [2, 1],\n", - " 'Deaths': [2, 1],\n", - " 'Disabilities': [1, 0],\n", - " 'Life Threatening Illnesses': [1, 0],\n", - " 'Severe reports': [2/2 * 100, 1/1 * 100],\n", - " 'Lethality': [2/2 * 100, 1/1 * 100]\n", + " 'Adverse Reaction Reports': [2, 1],\n", + " 'Deaths': [2, 1],\n", + " 'Disabilities': [1, 0],\n", + " 'Life Threatening Illnesses': [1, 0],\n", + " 'Severe reports': [2/2 * 100, 1/1 * 100],\n", + " 'Lethality': [2/2 * 100, 1/1 * 100]\n", " },\n", " index = pd.MultiIndex.from_tuples(\n", " [\n", @@ -1119,10 +1118,10 @@ " assert_frame_equal(\n", " internationalLotTable,\n", " TestHelper.createDataFrame(\n", - " columns = ['Total Number of Adverse Reaction Reports', 'Deaths', 'Disabilities', 'Life Threatening Illnesses', 'Severe reports', 'Lethality'],\n", - " data = [ [2, 2, 1, 1, 2/2 * 100, 2/2 * 100],\n", - " [1, 1, 0, 0, 1/1 * 100, 1/1 * 100],\n", - " [2, 0, 0, 0, 0/2 * 100, 0/2 * 100]],\n", + " columns = ['Adverse Reaction Reports', 'Deaths', 'Disabilities', 'Life Threatening Illnesses', 'Severe reports', 'Lethality'],\n", + " data = [ [2, 2, 1, 1, 2/2 * 100, 2/2 * 100],\n", + " [1, 1, 0, 0, 1/1 * 100, 1/1 * 100],\n", + " [2, 0, 0, 0, 0/2 * 100, 0/2 * 100]],\n", " index = pd.Index(\n", " [\n", " 'France',\n", @@ -1154,9 +1153,9 @@ " assert_frame_equal(\n", " batchCodeTable,\n", " TestHelper.createDataFrame(\n", - " columns = ['Total Number of Adverse Reaction Reports', 'Deaths', 'Disabilities', 'Life Threatening Illnesses', 'Company', 'Severe reports', 'Lethality'],\n", - " data = [ [2, 1, 2, 2, 'MODERNA', 2/2 * 100, 1/2 * 100],\n", - " [1, 0, 0, 0, 'MODERNA', 0/1 * 100, 0/1 * 100]],\n", + " columns = ['Adverse Reaction Reports', 'Deaths', 'Disabilities', 'Life Threatening Illnesses', 'Company', 'Severe reports', 'Lethality'],\n", + " data = [ [2, 1, 2, 2, 'MODERNA', 2/2 * 100, 1/2 * 100],\n", + " [1, 0, 0, 0, 'MODERNA', 0/1 * 100, 0/1 * 100]],\n", " index = pd.Index(\n", " [\n", " '030L20B',\n", @@ -1263,7 +1262,7 @@ "outputs": [], "source": [ "def saveBatchCodeTable(vaers, file):\n", - " # FK-TODO: show \"Sever Reports\"\n", + " # FK-TODO: show \"Severe Reports\"\n", " # FK-TODO: show combination of ALL doses\n", " batchCodeTable = BatchCodeTableFactory.createBatchCodeTable(vaers, dose = '1', minADRsForLethality = 100)\n", " batchCodeTable.index.set_names(\"Batch\", inplace = True)\n", @@ -1379,7 +1378,7 @@ "metadata": {}, "outputs": [], "source": [ - "internationalLotTable = internationalLotTable[internationalLotTable['Total Number of Adverse Reaction Reports'] > 50]\n", + "internationalLotTable = internationalLotTable[internationalLotTable['Adverse Reaction Reports'] > 50]\n", "IOUtils.saveDataFrame(internationalLotTable, 'results/international/International_Deadly_Lots')\n", "internationalLotTable" ] @@ -1395,7 +1394,7 @@ " batchCodeTable = InternationalLotTableFactory.createBatchCodeTableByCountry(nonDomesticVaers, country)\n", " batchCodeTable.index.set_names(\"Batch\", inplace = True)\n", " if minADRsForLethality is not None:\n", - " batchCodeTable.loc[batchCodeTable['Total Number of Adverse Reaction Reports'] < minADRsForLethality, ['Severe reports', 'Lethality']] = [np.nan, np.nan]\n", + " batchCodeTable.loc[batchCodeTable['Adverse Reaction Reports'] < minADRsForLethality, ['Severe reports', 'Lethality']] = [np.nan, np.nan]\n", " IOUtils.saveDataFrame(batchCodeTable, '../docs/data/' + country)\n", " display(country + \":\", batchCodeTable)\n", "\n", @@ -1486,7 +1485,7 @@ "def createADRsByVAX_LOTTable(vaers, manufacturer):\n", " dataFrame = DataFrameFilter().filterByCovid19(vaers)\n", " dataFrame = DataFrameFilter().filterBy(dataFrame, manufacturer = manufacturer)\n", - " batchCodeTable = BatchCodeTableFactory._createSummationTableByVAX_LOT(dataFrame)[['Total Number of Adverse Reaction Reports']].reset_index()\n", + " batchCodeTable = BatchCodeTableFactory._createSummationTableByVAX_LOT(dataFrame)[['Adverse Reaction Reports']].reset_index()\n", " return batchCodeTable\n", "\n", "def filterColumnOfDataFrameWithRegexp(dataFrame, column, regexp):\n", @@ -1508,7 +1507,7 @@ "twoLetterPrefix = re.compile(r'^[a-zA-Z]{2}')\n", "batchCodeTable = filterColumnOfDataFrameWithRegexp(dataFrame = batchCodeTable, column = 'VAX_LOT_PREFIX', regexp = twoLetterPrefix)\n", "batchCodeTable = batchCodeTable[batchCodeTable['VAX_LOT_PREFIX'].isin(['EN', 'EP', 'ER', 'EW', 'FA', 'FC', 'FD', 'FE', 'FH'])]\n", - "batchCodeTable = batchCodeTable[batchCodeTable['Total Number of Adverse Reaction Reports'] > 400]\n", + "batchCodeTable = batchCodeTable[batchCodeTable['Adverse Reaction Reports'] > 400]\n", "batchCodeTable" ] }, @@ -1523,7 +1522,7 @@ "\n", "sns.set(rc = {'figure.figsize': (11.7, 8.27)})\n", "sns.set_theme()\n", - "chart = sns.stripplot(x = \"VAX_LOT_PREFIX\", y = \"Total Number of Adverse Reaction Reports\", data = batchCodeTable)" + "chart = sns.stripplot(x = \"VAX_LOT_PREFIX\", y = \"Adverse Reaction Reports\", data = batchCodeTable)" ] }, { @@ -1533,7 +1532,7 @@ "metadata": {}, "outputs": [], "source": [ - "sns.pointplot(x = \"VAX_LOT_PREFIX\", y = \"Total Number of Adverse Reaction Reports\", data = batchCodeTable, estimator = np.mean)" + "sns.pointplot(x = \"VAX_LOT_PREFIX\", y = \"Adverse Reaction Reports\", data = batchCodeTable, estimator = np.mean)" ] }, { @@ -1546,7 +1545,7 @@ "import seaborn as sns\n", "sns.set_theme(style = \"ticks\", palette = \"pastel\")\n", "\n", - "sns.boxplot(x = \"VAX_LOT_PREFIX\", y = \"Total Number of Adverse Reaction Reports\", data = batchCodeTable)" + "sns.boxplot(x = \"VAX_LOT_PREFIX\", y = \"Adverse Reaction Reports\", data = batchCodeTable)" ] }, { @@ -1571,7 +1570,7 @@ "batchCodeTable = filterColumnOfDataFrameWithRegexp(dataFrame = batchCodeTable, column = 'VAX_LOT', regexp = modernaBatchCodePrefix)\n", "batchCodeTable['CONCENTRATION'] = batchCodeTable['VAX_LOT'].str[3]\n", "batchCodeTable = batchCodeTable.sort_values(by = 'CONCENTRATION', ascending = True)\n", - "batchCodeTable = batchCodeTable[batchCodeTable['Total Number of Adverse Reaction Reports'] > 400]\n", + "batchCodeTable = batchCodeTable[batchCodeTable['Adverse Reaction Reports'] > 400]\n", "batchCodeTable" ] }, @@ -1588,7 +1587,7 @@ "\n", "sns.set(rc = {'figure.figsize': (11.7, 8.27)})\n", "sns.set_theme()\n", - "chart = sns.stripplot(x = \"CONCENTRATION\", y = \"Total Number of Adverse Reaction Reports\", data = batchCodeTable, order = order)" + "chart = sns.stripplot(x = \"CONCENTRATION\", y = \"Adverse Reaction Reports\", data = batchCodeTable, order = order)" ] }, { @@ -1598,7 +1597,7 @@ "metadata": {}, "outputs": [], "source": [ - "sns.pointplot(x = \"CONCENTRATION\", y = \"Total Number of Adverse Reaction Reports\", data = batchCodeTable, estimator = np.mean, order = order)" + "sns.pointplot(x = \"CONCENTRATION\", y = \"Adverse Reaction Reports\", data = batchCodeTable, estimator = np.mean, order = order)" ] }, { @@ -1611,7 +1610,7 @@ "import seaborn as sns\n", "sns.set_theme(style = \"ticks\", palette = \"pastel\")\n", "\n", - "sns.boxplot(x = \"CONCENTRATION\", y = \"Total Number of Adverse Reaction Reports\", data = batchCodeTable, order = order)" + "sns.boxplot(x = \"CONCENTRATION\", y = \"Adverse Reaction Reports\", data = batchCodeTable, order = order)" ] }, { @@ -1649,7 +1648,7 @@ "def _getCovid19BatchCodeTable(dataFrame):\n", " batchCodeTable = BatchCodeTableFactory._createSummationTableByVAX_LOT(dataFrame)[\n", " [\n", - " 'Total Number of Adverse Reaction Reports',\n", + " 'Adverse Reaction Reports',\n", " 'Deaths',\n", " 'Disabilities',\n", " 'Life Threatening Illnesses',\n", @@ -1695,7 +1694,7 @@ "#\n", "#sns.set(rc = {'figure.figsize': (11.7, 8.27)})\n", "#sns.set_theme()\n", - "#chart = sns.stripplot(x = \"VAX_LOT\", y = \"Total Number of Adverse Reaction Reports\", data = covid19PfizerBatchCodeTable)" + "#chart = sns.stripplot(x = \"VAX_LOT\", y = \"Adverse Reaction Reports\", data = covid19PfizerBatchCodeTable)" ] }, {