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regenerating histograms

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This commit is contained in:
frankknoll
2023-01-31 10:22:38 +01:00
parent eae68eec9f
commit 99f679359d
20 changed files with 89 additions and 11970 deletions
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259
docs/batchCodeTable.html
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20
docs/data/histograms/#044A21A/EXP 8/.json
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@@ -1,19 +1 @@
{ {"batchcode": "#044A21A/EXP 8/", "histograms": [{"batchcodes": ["#044A21A/EXP 8/"], "histogram": {"Dizziness": 1, "Ear pain": 1, "Fatigue": 1, "Headache": 1, "Illness": 1, "Lymphadenopathy": 1, "Oropharyngeal pain": 1}}]}
"batchcode": "#044A21A/EXP 8/",
"histograms": [
{
"batchcodes": [
"#044A21A/EXP 8/"
],
"histogram": {
"Dizziness": 1,
"Ear pain": 1,
"Fatigue": 1,
"Headache": 1,
"Illness": 1,
"Lymphadenopathy": 1,
"Oropharyngeal pain": 1
}
}
]
}

17
docs/data/histograms/(77/11)20A.json
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@@ -1,16 +1 @@
{ {"batchcode": "(77/11)20A", "histograms": [{"batchcodes": ["(77/11)20A"], "histogram": {"Headache": 1, "Vaccination site erythema": 1, "Vaccination site induration": 1, "Vaccination site rash": 1}}]}
"batchcode": "(77/11)20A",
"histograms": [
{
"batchcodes": [
"(77/11)20A"
],
"histogram": {
"Headache": 1,
"Vaccination site erythema": 1,
"Vaccination site induration": 1,
"Vaccination site rash": 1
}
}
]
}

15
docs/data/histograms/003A21A EXP 08/.json
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@@ -1,14 +1 @@
{ {"batchcode": "003A21A EXP 08/", "histograms": [{"batchcodes": ["003A21A EXP 08/"], "histogram": {"Dizziness": 1, "Hypertension": 1}}]}
"batchcode": "003A21A EXP 08/",
"histograms": [
{
"batchcodes": [
"003A21A EXP 08/"
],
"histogram": {
"Dizziness": 1,
"Hypertension": 1
}
}
]
}

4642
docs/data/histograms/026L20A.json
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17
docs/data/histograms/030A21A EXP 8/1.json
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@@ -1,16 +1 @@
{ {"batchcode": "030A21A EXP 8/1", "histograms": [{"batchcodes": ["030A21A EXP 8/1"], "histogram": {"Axillary pain": 1, "Muscle rigidity": 1, "Myalgia": 1, "Pain": 1}}]}
"batchcode": "030A21A EXP 8/1",
"histograms": [
{
"batchcodes": [
"030A21A EXP 8/1"
],
"histogram": {
"Axillary pain": 1,
"Muscle rigidity": 1,
"Myalgia": 1,
"Pain": 1
}
}
]
}

15
docs/data/histograms/038A21A (3/18/2.json
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@@ -1,14 +1 @@
{ {"batchcode": "038A21A (3/18/2", "histograms": [{"batchcodes": ["032B21A (4/15/2", "038A21A (3/18/2"], "histogram": {"Sensory disturbance": 1}}]}
"batchcode": "038A21A (3/18/2",
"histograms": [
{
"batchcodes": [
"032B21A (4/15/2",
"038A21A (3/18/2"
],
"histogram": {
"Sensory disturbance": 1
}
}
]
}

3957
docs/data/histograms/039K20A.json
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14
docs/data/histograms/203A/21A.json
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@@ -1,13 +1 @@
{ {"batchcode": "203A/21A", "histograms": [{"batchcodes": ["203A/21A"], "histogram": {"Unevaluable event": 1}}]}
"batchcode": "203A/21A",
"histograms": [
{
"batchcodes": [
"203A/21A"
],
"histogram": {
"Unevaluable event": 1
}
}
]
}

16
docs/data/histograms/EIV6201.json
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@@ -1,15 +1 @@
{ {"batchcode": "EIV6201", "histograms": [{"batchcodes": ["EIV6201"], "histogram": {"Rash": 1, "Rash erythematous": 1, "Rash pruritic": 1}}]}
"batchcode": "EIV6201",
"histograms": [
{
"batchcodes": [
"EIV6201"
],
"histogram": {
"Rash": 1,
"Rash erythematous": 1,
"Rash pruritic": 1
}
}
]
}

921
docs/data/histograms/FD1921.json
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22
docs/data/histograms/FD6840..json
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@@ -1,21 +1 @@
{ {"batchcode": "FD6840.", "histograms": [{"batchcodes": ["FD6840."], "histogram": {"Blood test": 1, "COVID-19": 1, "Coagulation test": 1, "Inappropriate schedule of product administration": 1, "Pulmonary embolism": 1, "SARS-CoV-2 test": 1, "Ultrasound scan": 1, "Vaccination failure": 1, "X-ray": 1}}]}
"batchcode": "FD6840.",
"histograms": [
{
"batchcodes": [
"FD6840."
],
"histogram": {
"Blood test": 1,
"COVID-19": 1,
"Coagulation test": 1,
"Inappropriate schedule of product administration": 1,
"Pulmonary embolism": 1,
"SARS-CoV-2 test": 1,
"Ultrasound scan": 1,
"Vaccination failure": 1,
"X-ray": 1
}
}
]
}

900
docs/data/histograms/FD6840.json
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58
docs/data/histograms/FE 6208.json
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@@ -1,57 +1 @@
{ {"batchcode": "FE 6208", "histograms": [{"batchcodes": ["FE 6208"], "histogram": {"SARS-CoV-2 test": 127, "COVID-19": 126, "Drug ineffective": 71, "Vaccination failure": 56, "Inappropriate schedule of product administration": 4, "Myalgia": 3, "Pyrexia": 3, "Body temperature": 2, "Chest pain": 2, "Fatigue": 2, "Headache": 2, "Angina pectoris": 1, "Anxiety": 1, "Arthralgia": 1, "Breast mass": 1, "Cerebrovascular accident": 1, "Chest discomfort": 1, "Depression": 1, "Disturbance in attention": 1, "Erectile dysfunction": 1, "Exposure during pregnancy": 1, "Gait disturbance": 1, "Haematochezia": 1, "Human papilloma virus test": 1, "Human papilloma virus test positive": 1, "Hyperhidrosis": 1, "Hypertension": 1, "Influenza like illness": 1, "Laboratory test": 1, "Oedema peripheral": 1, "Pain": 1, "Pain in extremity": 1, "Panic attack": 1, "Paraesthesia": 1, "Pruritus": 1, "Purpura": 1, "Radical hysterectomy": 1, "Rectal haemorrhage": 1, "SARS-CoV-2 test positive": 1, "Sleep disorder": 1, "Tremor": 1, "Trisomy 21": 1, "Troponin": 1, "Troponin increased": 1, "Weight decreased": 1}}]}
"batchcode": "FE 6208",
"histograms": [
{
"batchcodes": [
"FE 6208"
],
"histogram": {
"SARS-CoV-2 test": 127,
"COVID-19": 126,
"Drug ineffective": 71,
"Vaccination failure": 56,
"Inappropriate schedule of product administration": 4,
"Myalgia": 3,
"Pyrexia": 3,
"Body temperature": 2,
"Chest pain": 2,
"Fatigue": 2,
"Headache": 2,
"Angina pectoris": 1,
"Anxiety": 1,
"Arthralgia": 1,
"Breast mass": 1,
"Cerebrovascular accident": 1,
"Chest discomfort": 1,
"Depression": 1,
"Disturbance in attention": 1,
"Erectile dysfunction": 1,
"Exposure during pregnancy": 1,
"Gait disturbance": 1,
"Haematochezia": 1,
"Human papilloma virus test": 1,
"Human papilloma virus test positive": 1,
"Hyperhidrosis": 1,
"Hypertension": 1,
"Influenza like illness": 1,
"Laboratory test": 1,
"Oedema peripheral": 1,
"Pain": 1,
"Pain in extremity": 1,
"Panic attack": 1,
"Paraesthesia": 1,
"Pruritus": 1,
"Purpura": 1,
"Radical hysterectomy": 1,
"Rectal haemorrhage": 1,
"SARS-CoV-2 test positive": 1,
"Sleep disorder": 1,
"Tremor": 1,
"Trisomy 21": 1,
"Troponin": 1,
"Troponin increased": 1,
"Weight decreased": 1
}
}
]
}

22
docs/data/histograms/FE3380/V1328.json
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@@ -1,21 +1 @@
{ {"batchcode": "FE3380/V1328", "histograms": [{"batchcodes": ["FE3380/V1328"], "histogram": {"Abdominal pain upper": 1, "Abortion spontaneous": 1, "Back pain": 1, "Fatigue": 1, "Headache": 1, "Menstrual disorder": 1, "Menstruation delayed": 1, "Nausea": 1, "Thrombosis": 1}}]}
"batchcode": "FE3380/V1328",
"histograms": [
{
"batchcodes": [
"FE3380/V1328"
],
"histogram": {
"Abdominal pain upper": 1,
"Abortion spontaneous": 1,
"Back pain": 1,
"Fatigue": 1,
"Headache": 1,
"Menstrual disorder": 1,
"Menstruation delayed": 1,
"Nausea": 1,
"Thrombosis": 1
}
}
]
}

17
docs/data/histograms/FE620.json
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@@ -1,16 +1 @@
{ {"batchcode": "FE620", "histograms": [{"batchcodes": ["FE620"], "histogram": {"COVID-19": 13, "SARS-CoV-2 test": 13, "Vaccination failure": 9, "Drug ineffective": 4}}]}
"batchcode": "FE620",
"histograms": [
{
"batchcodes": [
"FE620"
],
"histogram": {
"COVID-19": 13,
"SARS-CoV-2 test": 13,
"Vaccination failure": 9,
"Drug ineffective": 4
}
}
]
}

1022
docs/data/histograms/FE6208.json
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18
docs/data/histograms/FE628.json
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@@ -1,17 +1 @@
{ {"batchcode": "FE628", "histograms": [{"batchcodes": ["FE628"], "histogram": {"Carcinoembryonic antigen": 1, "Computerised tomogram thorax": 1, "Neurone-specific enolase": 1, "Tumour marker increased": 1, "Tumour marker test": 1}}]}
"batchcode": "FE628",
"histograms": [
{
"batchcodes": [
"FE628"
],
"histogram": {
"Carcinoembryonic antigen": 1,
"Computerised tomogram thorax": 1,
"Neurone-specific enolase": 1,
"Tumour marker increased": 1,
"Tumour marker test": 1
}
}
]
}

101
docs/data/histograms/FR2613.json
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@@ -1,100 +1 @@
{ {"batchcode": "FR2613", "histograms": [{"batchcodes": ["EN6206", "FR2613"], "histogram": {"Epistaxis": 1, "Thrombosis": 1}}, {"batchcodes": ["ER8731", "FR2613"], "histogram": {"Biopsy": 1, "Breast cancer female": 1, "Magnetic resonance imaging": 1}}, {"batchcodes": ["EW0161", "FR2613"], "histogram": {"Cardiac stress test": 1, "Chest discomfort": 1, "Chest pain": 1, "Dyspnoea": 1, "Electrocardiogram": 1}}, {"batchcodes": ["EW0162", "FR2613"], "histogram": {"Arthralgia": 1, "Fatigue": 1, "Injection site pain": 1, "Neck pain": 1, "Palpitations": 1, "Pyrexia": 1, "Tremor": 1}}, {"batchcodes": ["FR2613", "FR8729"], "histogram": {"Disturbance in attention": 2, "Fatigue": 2, "Feeling abnormal": 2, "Vision blurred": 1}}, {"batchcodes": ["FR2613"], "histogram": {"COVID-19": 2, "Biopsy breast normal": 1, "Blood pressure increased": 1, "Body temperature": 1, "Breast cyst": 1, "Chills": 1, "Decreased appetite": 1, "Drug ineffective": 1, "Electrocardiogram": 1, "Erythema": 1, "Fatigue": 1, "Headache": 1, "Hyperhidrosis": 1, "Influenza like illness": 1, "Injection site erythema": 1, "Mammogram abnormal": 1, "Mass": 1, "Myalgia": 1, "Nausea": 1, "Nodule": 1, "Oxygen saturation": 1, "Pain in extremity": 1, "Pyrexia": 1, "Sleep disorder": 1, "Toothache": 1, "Ultrasound breast": 1, "Vital capacity": 1}}]}
"batchcode": "FR2613",
"histograms": [
{
"batchcodes": [
"EN6206",
"FR2613"
],
"histogram": {
"Epistaxis": 1,
"Thrombosis": 1
}
},
{
"batchcodes": [
"ER8731",
"FR2613"
],
"histogram": {
"Biopsy": 1,
"Breast cancer female": 1,
"Magnetic resonance imaging": 1
}
},
{
"batchcodes": [
"EW0161",
"FR2613"
],
"histogram": {
"Cardiac stress test": 1,
"Chest discomfort": 1,
"Chest pain": 1,
"Dyspnoea": 1,
"Electrocardiogram": 1
}
},
{
"batchcodes": [
"EW0162",
"FR2613"
],
"histogram": {
"Arthralgia": 1,
"Fatigue": 1,
"Injection site pain": 1,
"Neck pain": 1,
"Palpitations": 1,
"Pyrexia": 1,
"Tremor": 1
}
},
{
"batchcodes": [
"FR2613",
"FR8729"
],
"histogram": {
"Disturbance in attention": 2,
"Fatigue": 2,
"Feeling abnormal": 2,
"Vision blurred": 1
}
},
{
"batchcodes": [
"FR2613"
],
"histogram": {
"COVID-19": 2,
"Biopsy breast normal": 1,
"Blood pressure increased": 1,
"Body temperature": 1,
"Breast cyst": 1,
"Chills": 1,
"Decreased appetite": 1,
"Drug ineffective": 1,
"Electrocardiogram": 1,
"Erythema": 1,
"Fatigue": 1,
"Headache": 1,
"Hyperhidrosis": 1,
"Influenza like illness": 1,
"Injection site erythema": 1,
"Mammogram abnormal": 1,
"Mass": 1,
"Myalgia": 1,
"Nausea": 1,
"Nodule": 1,
"Oxygen saturation": 1,
"Pain in extremity": 1,
"Pyrexia": 1,
"Sleep disorder": 1,
"Toothache": 1,
"Ultrasound breast": 1,
"Vital capacity": 1
}
}
]
}

6
src/HowBadIsMyBatch.ipynb
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@@ -107,7 +107,7 @@
"from SymptomByBatchcodeTableFactory import SymptomByBatchcodeTableFactory\n", "from SymptomByBatchcodeTableFactory import SymptomByBatchcodeTableFactory\n",
"\n", "\n",
"symptomByBatchcodeTable = SymptomByBatchcodeTableFactory.createSymptomByBatchcodeTable(international_VAERSVAX_Covid19, international_VAERSSYMPTOMS)\n", "symptomByBatchcodeTable = SymptomByBatchcodeTableFactory.createSymptomByBatchcodeTable(international_VAERSVAX_Covid19, international_VAERSSYMPTOMS)\n",
"symptomByBatchcodeTable.to_pickle('tmp/symptomByBatchcodeTable.pkl')\n", "# symptomByBatchcodeTable.to_pickle('tmp/symptomByBatchcodeTable.pkl')\n",
"symptomByBatchcodeTable" "symptomByBatchcodeTable"
] ]
}, },
@@ -118,8 +118,8 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"symptomByBatchcodeTable = pd.read_pickle('tmp/symptomByBatchcodeTable.pkl')\n", "# symptomByBatchcodeTable = pd.read_pickle('tmp/symptomByBatchcodeTable.pkl')\n",
"symptomByBatchcodeTable" "# symptomByBatchcodeTable"
] ]
}, },
{ {