refactoring

src/HowBadIsMyBatch.ipynb

@@ -81,45 +81,6 @@
     "## Download VAERS-Data"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "8f0bfb9c",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "import os\n",
-    "import time\n",
-    "\n",
-    "class AndroidEmulator:\n",
-    "    \n",
-    "    @staticmethod\n",
-    "    def run(runnable):\n",
-    "        AndroidEmulator._start()\n",
-    "        result = runnable()\n",
-    "        AndroidEmulator._stop()\n",
-    "        return result\n",
-    "    \n",
-    "    @staticmethod\n",
-    "    def _start():\n",
-    "        os.system(\"/home/frankknoll/Android/Sdk/emulator/emulator -avd Pixel_2_API_30 -no-window &\")\n",
-    "        AndroidEmulator._waitUntilStarted()\n",
-    "        \n",
-    "    @staticmethod\n",
-    "    def _waitUntilStarted():\n",
-    "        while not AndroidEmulator._isStarted():\n",
-    "            time.sleep(1)\n",
-    "\n",
-    "    @staticmethod\n",
-    "    def _isStarted():\n",
-    "        boot_completed = ! adb shell getprop sys.boot_completed\n",
-    "        return boot_completed[0] == '1'\n",
-    "\n",
-    "    @staticmethod\n",
-    "    def _stop():\n",
-    "        ! adb emu kill"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -149,36 +110,6 @@
     "    downloadVAERSFileAndUnzip('NonDomesticVAERSData.zip')"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "a271254b",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "from VaersDescrReader import VaersDescrReader\n"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "7b5d6df0",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "from VaersDescr2DataFrameConverter import VaersDescr2DataFrameConverter"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "6b639196",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "from DataFrameNormalizer import DataFrameNormalizer"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -189,26 +120,6 @@
     "from DataFrameFilter import DataFrameFilter"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "c40bd0f0",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "from CountryColumnAdder import CountryColumnAdder"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "3abe3384",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "from SevereColumnAdder import SevereColumnAdder"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -293,29 +204,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "def getVaersForYears(years):\n",
-    "    def addCountryColumn(dataFrame):\n",
-    "        dataFrame['COUNTRY'] = 'United States'\n",
-    "        return dataFrame\n",
-    "\n",
-    "    return _getVaers(\n",
-    "        _getVaersDescrReader().readVaersDescrsForYears(years),\n",
-    "        addCountryColumn)\n",
-    "\n",
-    "def getNonDomesticVaers():\n",
-    "    return _getVaers(\n",
-    "        [_getVaersDescrReader().readNonDomesticVaersDescr()],\n",
-    "        CountryColumnAdder.addCountryColumn)\n",
-    "\n",
-    "def _getVaersDescrReader():\n",
-    "    return VaersDescrReader(dataDir = \"VAERS\")\n",
-    "\n",
-    "def _getVaers(vaersDescrs, addCountryColumn):\n",
-    "    dataFrame = VaersDescr2DataFrameConverter.createDataFrameFromDescrs(vaersDescrs)\n",
-    "    dataFrame = addCountryColumn(dataFrame)\n",
-    "    DataFrameNormalizer.normalize(dataFrame)\n",
-    "    dataFrame = SevereColumnAdder.addSevereColumn(dataFrame)\n",
-    "    return dataFrame"
+    "from VaersReader import getVaersForYears, getNonDomesticVaers"
    ]
   },
   {