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Executing Intensivstationen.ipynb in workflow

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frankknoll
2023-01-17 14:58:00 +01:00
parent b782c79363
commit 986b06c1fd
1 changed files with 19 additions and 6 deletions
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25
.github/workflows/buildAndDeployWebsite.yml vendored
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@@ -13,6 +13,10 @@ jobs:
uses: actions/checkout@v3 uses: actions/checkout@v3
with: with:
token: ${{ secrets.HOW_BAD_IS_MY_BATCH_ACCESS_TOKEN }} token: ${{ secrets.HOW_BAD_IS_MY_BATCH_ACCESS_TOKEN }}
- name: Configuring git
run: |
git config --global user.email "Knoll_Frank@web.de"
git config --global user.name "FK"
- name: Installing dependencies - name: Installing dependencies
uses: conda-incubator/setup-miniconda@v2 uses: conda-incubator/setup-miniconda@v2
with: with:
@@ -26,18 +30,27 @@ jobs:
sudo apt install google-chrome-stable sudo apt install google-chrome-stable
pip install selenium webdriver-manager pip install selenium webdriver-manager
pip install pycountry pip install pycountry
- name: Executing HowBadIsMyBatch.ipynb - name: Installing ipython kernel
shell: bash -el {0} shell: bash -el {0}
run: | run: |
ipython kernel install --user --name=howbadismybatch-venv-kernel ipython kernel install --user --name=howbadismybatch-venv-kernel
- name: Executing HowBadIsMyBatch.ipynb
shell: bash -el {0}
run: |
cd src cd src
jupyter nbconvert --ExecutePreprocessor.kernel_name="howbadismybatch-venv-kernel" --to notebook --allow-errors --execute HowBadIsMyBatch.ipynb jupyter nbconvert --ExecutePreprocessor.kernel_name="howbadismybatch-venv-kernel" --to notebook --allow-errors --execute HowBadIsMyBatch.ipynb
jupyter nbconvert --to html HowBadIsMyBatch.nbconvert.ipynb jupyter nbconvert --to html HowBadIsMyBatch.nbconvert.ipynb
- name: Pushing changes to GitHub Pages
shell: bash -el {0}
run: |
git config --global user.email "Knoll_Frank@web.de"
git config --global user.name "FK"
git add -A git add -A
git commit -m "updating data for batch codes" git commit -m "updating data for batch codes"
- name: Executing Intensivstationen.ipynb
shell: bash -el {0}
run: |
src/intensivstationen
jupyter nbconvert --ExecutePreprocessor.kernel_name="howbadismybatch-venv-kernel" --to notebook --allow-errors --execute Intensivstationen.ipynb
jupyter nbconvert --to html Intensivstationen.nbconvert.ipynb
git add -A
git commit -m "updating data for Intensivstationen"
- name: Pushing changes
shell: bash -el {0}
run: |
git push git push