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removing batchCodeTable

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frankknoll
2023-04-13 10:51:45 +02:00
parent 5c205acd32
commit 8bc3d63a3a
3 changed files with 3 additions and 8 deletions
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1
docs/data/batchCodeTables/Global.json
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File diff suppressed because one or more lines are too long

6
src/BatchCodeTablePersister.py
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@@ -1,8 +1,6 @@
from IOUtils import IOUtils
import numpy as np import numpy as np
def createGlobalBatchCodeTable(minADRsForLethality, batchCodeTableFactory):
def createAndSaveGlobalBatchCodeTable(minADRsForLethality, batchCodeTableFactory):
batchCodeTable = batchCodeTableFactory.createGlobalBatchCodeTable() batchCodeTable = batchCodeTableFactory.createGlobalBatchCodeTable()
batchCodeTable.index.set_names("Batch", inplace=True) batchCodeTable.index.set_names("Batch", inplace=True)
if minADRsForLethality is not None: if minADRsForLethality is not None:
@@ -22,6 +20,4 @@ def createAndSaveGlobalBatchCodeTable(minADRsForLethality, batchCodeTableFactory
'Severe reports', 'Severe reports',
'Lethality' 'Lethality'
]] ]]
# FK-TODO: remove Global.json
IOUtils.saveDataFrameAsJson(batchCodeTable, '../docs/data/batchCodeTables/Global.json')
return batchCodeTable return batchCodeTable

4
src/HowBadIsMyBatch.ipynb
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@@ -18,7 +18,7 @@
"from DateProvider import DateProvider\n", "from DateProvider import DateProvider\n",
"from InternationalVaersCovid19Provider import getInternationalVaersCovid19, get_international_VAERSVAX_VAERSSYMPTOMS_Covid19\n", "from InternationalVaersCovid19Provider import getInternationalVaersCovid19, get_international_VAERSVAX_VAERSSYMPTOMS_Covid19\n",
"from BatchCodeTableHtmlUpdater import updateBatchCodeTableHtmlFile\n", "from BatchCodeTableHtmlUpdater import updateBatchCodeTableHtmlFile\n",
"from BatchCodeTablePersister import createAndSaveGlobalBatchCodeTable\n", "from BatchCodeTablePersister import createGlobalBatchCodeTable\n",
"from SymptomByBatchcodeTableFactory import SymptomByBatchcodeTableFactory\n", "from SymptomByBatchcodeTableFactory import SymptomByBatchcodeTableFactory\n",
"from HistogramFactoryAndPersister import createAndSaveGlobalHistograms\n", "from HistogramFactoryAndPersister import createAndSaveGlobalHistograms\n",
"from BatchCodeTableFactory import BatchCodeTableFactory\n", "from BatchCodeTableFactory import BatchCodeTableFactory\n",
@@ -130,7 +130,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"batchCodeTable = createAndSaveGlobalBatchCodeTable(\n", "batchCodeTable = createGlobalBatchCodeTable(\n",
" minADRsForLethality = 100,\n", " minADRsForLethality = 100,\n",
" batchCodeTableFactory = BatchCodeTableFactory(internationalVaersCovid19))\n", " batchCodeTableFactory = BatchCodeTableFactory(internationalVaersCovid19))\n",
"batchCodeTable" "batchCodeTable"