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refactoring

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frankknoll
2022-02-11 20:54:49 +01:00
parent 3da5c46a8b
commit 80ab6a8157
9 changed files with 153932 additions and 64 deletions
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69
src/HowBadIsMyBatch.ipynb
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@@ -991,7 +991,7 @@
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/moderna.html\n",
"saveBatchCodeTable(vaers, \"MODERNA\", \"results/batchCodes/moderna\")"
"saveBatchCodeTable(vaers, \"MODERNA\", \"../data/moderna\")"
]
},
{
@@ -1010,7 +1010,7 @@
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/pfizer.html\n",
"saveBatchCodeTable(vaers, \"PFIZER\\BIONTECH\", \"results/batchCodes/pfizer\")"
"saveBatchCodeTable(vaers, \"PFIZER\\BIONTECH\", \"../data/pfizer\")"
]
},
{
@@ -1029,7 +1029,7 @@
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/janssen.html\n",
"saveBatchCodeTable(vaers, \"JANSSEN\", \"results/batchCodes/janssen\")"
"saveBatchCodeTable(vaers, \"JANSSEN\", \"../data/janssen\")"
]
},
{
@@ -1048,7 +1048,7 @@
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/modernaforeigndeaths.html\n",
"saveBatchCodeTable(nonDomesticVaers, \"MODERNA\", \"results/batchCodes/modernaInternational\")"
"saveBatchCodeTable(nonDomesticVaers, \"MODERNA\", \"../data/modernaInternational\")"
]
},
{
@@ -1067,7 +1067,7 @@
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/pfizerforeigndeaths.html\n",
"saveBatchCodeTable(nonDomesticVaers, \"PFIZER\\BIONTECH\", \"results/batchCodes/pfizerInternational\")"
"saveBatchCodeTable(nonDomesticVaers, \"PFIZER\\BIONTECH\", \"../data/pfizerInternational\")"
]
},
{
@@ -1086,66 +1086,9 @@
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/janssenforeigndeaths.html\n",
"saveBatchCodeTable(nonDomesticVaers, \"JANSSEN\", \"results/batchCodes/janssenInternational\")"
"saveBatchCodeTable(nonDomesticVaers, \"JANSSEN\", \"../data/janssenInternational\")"
]
},
{
"cell_type": "markdown",
"id": "e096e1ed",
"metadata": {},
"source": [
"### International batch codes"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "ae494a59",
"metadata": {},
"outputs": [],
"source": [
"allVaers = nonDomesticVaers # pd.concat([vaers, nonDomesticVaers])"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "e7ad1d12",
"metadata": {},
"outputs": [],
"source": [
"allVaers"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "5b13b0d3",
"metadata": {},
"outputs": [],
"source": [
"allCovid19Vaers = DataFrameFilter().filterByCovid19(allVaers)\n",
"batchCodeTable = BatchCodeTableFactory._createSummationTableByVAX_LOT(allCovid19Vaers)\n",
"display(batchCodeTable)\n",
"IOUtils.saveDataFrame(batchCodeTable, \"results/batchCodes/all\")"
]
},
{
"cell_type": "markdown",
"id": "3d0aa163",
"metadata": {},
"source": [
"### All batch codes"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "23c5c089",
"metadata": {},
"outputs": [],
"source": []
},
{
"cell_type": "markdown",
"id": "f677b620",