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combining batch code tables of all companies

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frankknoll
2022-02-12 21:06:49 +01:00
parent e7ae087108
commit 732c273095
7 changed files with 24 additions and 105 deletions
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38
batchCodeTable.html
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@@ -4,7 +4,7 @@
<head>
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>batch codes</title>
<title>Batch codes</title>
<!-- FK-TODO: keine externen Links -->
<link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.11.4/css/jquery.dataTables.css">
<link rel="stylesheet" type="text/css" href="batchCodeTable.css">
@@ -15,31 +15,13 @@
<script type="text/javascript" charset="utf8"
src="https://cdn.datatables.net/1.11.4/js/jquery.dataTables.min.js"></script>
<script>
function getSearchParams() {
const searchParams = new URLSearchParams(window.location.search);
return {
company: searchParams.get('company'),
companyName: searchParams.get('companyName'),
title: searchParams.get('title')
};
}
function replaceCssClassesWithStrs({ title, companyName }) {
replaceCssClassWithStr(".title", title);
replaceCssClassWithStr(".companyName", companyName);
}
function replaceCssClassWithStr(cssClass, str) {
document.querySelectorAll(cssClass).forEach(element => element.textContent = str);
}
function loadBatchCodeTable(file, searchPlaceholder) {
function loadBatchCodeTable() {
$('#batchCodeTable').DataTable(
{
ajax: file,
ajax: "data/batchCodeTable.json",
language:
{
searchPlaceholder: searchPlaceholder
searchPlaceholder: "Enter Batch Code"
},
search:
{
@@ -52,26 +34,23 @@
[
{
searchable: false,
targets: [1, 2, 3, 4]
targets: [1, 2, 3, 4, 5]
}
]
});
}
$(document).ready(function () {
const { company, companyName, title } = getSearchParams();
document.title = title;
replaceCssClassesWithStrs({ title, companyName });
loadBatchCodeTable("data/" + company + ".json", "Enter " + companyName + " Batch Code");
loadBatchCodeTable();
});
</script>
</head>
<body>
<span id="forkongithub"><a href="https://github.com/KnollFrank/HowBadIsMyBatch">Fork me on GitHub</a></span>
<h1 class="title"></h1>
<h1>Batch codes</h1>
<p>
<b>Check out your <span class="companyName"></span> batch code </b>&emsp;<font size="-2">(last updated 11th February
<b>Check out your batch code </b>&emsp;<font size="-2">(last updated 11th February
2022)</font>
<table class="display" id="batchCodeTable">
<thead>
@@ -81,6 +60,7 @@
<th>DEATHS</th>
<th>DISABILITIES</th>
<th>LIFE THREATENING ILLNESSES</th>
<th>COMPANY</th>
</tr>
</thead>
</table>

1
data/batchCodeTable.json Normal file
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1
data/janssen.json
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1
data/moderna.json
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1
data/pfizer.json
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14
index.html
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@@ -1,23 +1,11 @@
<!DOCTYPE html>
<meta charset="utf-8">
<html>
<head>
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>How Bad is My Batch</title>
<link rel="stylesheet" type="text/css" href="forkMeOnGitHub.css">
<meta http-equiv="refresh" content="0; url=batchCodeTable.html" />
</head>
<body>
<span id="forkongithub"><a href="https://github.com/KnollFrank/HowBadIsMyBatch">Fork me on GitHub</a></span>
<h1>How Bad is My Batch</h1>
<p>
<ul>
<li><a href="batchCodeTable.html?company=moderna&companyName=Moderna&title=Moderna">Moderna</a></li>
<li><a href="batchCodeTable.html?company=pfizer&companyName=Pfizer&title=Pfizer">Pfizer</a></li>
<li><a href="batchCodeTable.html?company=janssen&companyName=Janssen&title=Janssen">Janssen</a></li>
</ul>
</p>
</body>
</html>

73
src/HowBadIsMyBatch.ipynb
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@@ -228,10 +228,10 @@
"class BatchCodeTableFactory:\n",
"\n",
" @staticmethod\n",
" def createBatchCodeTable(dataFrame : pd.DataFrame, manufacturer, dose):\n",
" def createBatchCodeTable(dataFrame : pd.DataFrame, dose):\n",
" dataFrame = DataFrameFilter().filterByCovid19(dataFrame)\n",
" dataFrame = DataFrameFilter().filterBy(dataFrame, manufacturer = manufacturer, dose = dose)\n",
" return BatchCodeTableFactory._createSummationTableByVAX_LOT(dataFrame)[['ADRs', 'DEATHS', 'DISABILITIES', 'LIFE THREATENING ILLNESSES']]\n",
" dataFrame = DataFrameFilter().filterBy(dataFrame, dose = dose)\n",
" return BatchCodeTableFactory._createSummationTableByVAX_LOT(dataFrame)[['ADRs', 'DEATHS', 'DISABILITIES', 'LIFE THREATENING ILLNESSES', 'COMPANY']]\n",
"\n",
" # create table from https://www.howbadismybatch.com/combined.html\n",
" @staticmethod\n",
@@ -740,17 +740,17 @@
" dtypes = {'VAX_DOSE_SERIES': \"string\"})\n",
" }\n",
" ])\n",
" self._test_createBatchCodeTable(dataFrame, \"MODERNA\", '1')\n",
" self._test_createBatchCodeTable(dataFrame, '1')\n",
"\n",
" def test_createBatchCodeTable(self):\n",
" dataFrame = VaersDescr2DataFrameConverter.createDataFrameFromDescrs(\n",
" VaersDescrReader(dataDir = \"test/VAERS\").readAllVaersDescrs())\n",
" DataFrameNormalizer.normalize(dataFrame)\n",
" self._test_createBatchCodeTable(dataFrame, \"MODERNA\", '1')\n",
" self._test_createBatchCodeTable(dataFrame, '1')\n",
"\n",
" def _test_createBatchCodeTable(self, dataFrame, manufacturer, dose):\n",
" def _test_createBatchCodeTable(self, dataFrame, dose):\n",
" # When\n",
" batchCodeTable = BatchCodeTableFactory.createBatchCodeTable(dataFrame, manufacturer, dose)\n",
" batchCodeTable = BatchCodeTableFactory.createBatchCodeTable(dataFrame, dose)\n",
"\n",
" # Then\n",
" batchCodeTableExpected = pd.DataFrame(\n",
@@ -758,7 +758,8 @@
" 'ADRs': [2, 1],\n",
" 'DEATHS': [0, 1],\n",
" 'DISABILITIES': [2, 0],\n",
" 'LIFE THREATENING ILLNESSES': [0, 0]\n",
" 'LIFE THREATENING ILLNESSES': [0, 0],\n",
" 'COMPANY': ['MODERNA', 'MODERNA']\n",
" },\n",
" index = pd.Index(['025L20A', '037K20A'], name = 'VAX_LOT'))\n",
" assert_frame_equal(batchCodeTable, batchCodeTableExpected, check_dtype = False)\n"
@@ -961,8 +962,8 @@
"metadata": {},
"outputs": [],
"source": [
"def saveBatchCodeTable(vaers, manufacturer, file):\n",
" batchCodeTable = BatchCodeTableFactory.createBatchCodeTable(vaers, manufacturer = manufacturer, dose = '1')\n",
"def saveBatchCodeTable(vaers, file):\n",
" batchCodeTable = BatchCodeTableFactory.createBatchCodeTable(vaers, dose = '1')\n",
" display(batchCodeTable)\n",
" IOUtils.saveDataFrame(batchCodeTable, file)"
]
@@ -997,22 +998,12 @@
"internationalVaers = getInternationalVaers()"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "f74475e8",
"metadata": {},
"outputs": [],
"source": [
"internationalVaers"
]
},
{
"cell_type": "markdown",
"id": "987a04d1",
"metadata": {},
"source": [
"### Moderna batch codes"
"### Batch codes"
]
},
{
@@ -1023,45 +1014,7 @@
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/moderna.html\n",
"saveBatchCodeTable(internationalVaers, \"MODERNA\", \"../data/moderna\")"
]
},
{
"cell_type": "markdown",
"id": "29dd4daa",
"metadata": {},
"source": [
"### Pfizer batch codes"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "6121e2b3",
"metadata": {},
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/pfizer.html\n",
"saveBatchCodeTable(internationalVaers, \"PFIZER\\BIONTECH\", \"../data/pfizer\")"
]
},
{
"cell_type": "markdown",
"id": "7e83a551",
"metadata": {},
"source": [
"### Janssen batch codes"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "1a64eef5",
"metadata": {},
"outputs": [],
"source": [
"# https://www.howbadismybatch.com/janssen.html\n",
"saveBatchCodeTable(internationalVaers, \"JANSSEN\", \"../data/janssen\")"
"saveBatchCodeTable(internationalVaers, \"../data/batchCodeTable\")"
]
},
{