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refactoring

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frankknoll
2022-01-29 02:43:47 +01:00
parent c558c90513
commit 5805a8b240
1 changed files with 11 additions and 2 deletions
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13
HowBadIsMyBatch.ipynb
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@@ -23,7 +23,10 @@
"source": [ "source": [
"def _createDataFrame(vaersDescrs, manufacturer, dose):\n", "def _createDataFrame(vaersDescrs, manufacturer, dose):\n",
" def filter(df):\n", " def filter(df):\n",
" return df[(df[\"VAX_TYPE\"] == \"COVID19\") & (df[\"VAX_MANU\"] == manufacturer) & (df[\"VAX_DOSE_SERIES\"].str.contains(dose))]\n", " return df[\n",
" (df[\"VAX_TYPE\"] == \"COVID19\") &\n",
" (df[\"VAX_MANU\"] == manufacturer) &\n",
" (df[\"VAX_DOSE_SERIES\"].str.contains(dose))]\n",
"\n", "\n",
" def vaersDescr2DataFrame(vaersDescr):\n", " def vaersDescr2DataFrame(vaersDescr):\n",
" return pd.merge(\n", " return pd.merge(\n",
@@ -45,7 +48,13 @@
"def createDataFrame(dataDir, manufacturer, dose):\n", "def createDataFrame(dataDir, manufacturer, dose):\n",
" def readVaersDescr(year):\n", " def readVaersDescr(year):\n",
" def read_csv(file, usecols, dtype = {}):\n", " def read_csv(file, usecols, dtype = {}):\n",
" return pd.read_csv(file, index_col = 'VAERS_ID', encoding = 'latin1', low_memory = False, usecols = usecols, dtype = dtype)\n", " return pd.read_csv(\n",
" file,\n",
" index_col = 'VAERS_ID',\n",
" encoding = 'latin1',\n",
" low_memory = False,\n",
" usecols = usecols,\n",
" dtype = dtype)\n",
"\n", "\n",
" folder = dataDir + \"/\" + year + \"VAERSData/\"\n", " folder = dataDir + \"/\" + year + \"VAERSData/\"\n",
" return {\n", " return {\n",