starting HowBadIsMyBatch.ipynb

HowBadIsMyBatch.ipynb

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+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9de5907f-18f5-4cb1-903e-26028ff1fa03",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import numpy as np\n",
+    "import pandas as pd\n",
+    "pd.set_option('display.max_rows', 10)\n",
+    "pd.set_option('display.max_columns', None)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "ad0e6044",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_patients_22 = pd.read_csv(\"2021VAERSData/2021VAERSDATA.csv\", index_col='VAERS_ID', encoding='latin1', low_memory=False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4472e902",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_patients_22.index\n",
+    "df_patients_22"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "fb54ec47",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_vax_22 = pd.read_csv(\"2021VAERSData/2021VAERSVAX.csv\", index_col='VAERS_ID', encoding='latin1')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "d8942466",
+   "metadata": {
+    "scrolled": false
+   },
+   "outputs": [],
+   "source": [
+    "df_vax_22"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "d31c5225",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_COVID19_22 = df_vax_22[df_vax_22[\"VAX_TYPE\"] == \"COVID19\"]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "be2b57c9",
+   "metadata": {
+    "scrolled": false
+   },
+   "outputs": [],
+   "source": [
+    "df_COVID19_22"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "8c432ab2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_patients_COVID19 = pd.merge(df_patients_22, df_COVID19_22, left_index=True, right_index=True)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "fef882ff",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_patients_22.shape, df_COVID19_22.shape, df_patients_COVID19.shape"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "6ce15322",
+   "metadata": {
+    "scrolled": false
+   },
+   "outputs": [],
+   "source": [
+    "# pd.set_option('display.max_rows', 100)\n",
+    "df_patients_COVID19"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "233bc590",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_PFIZER_BIONTECH = df_patients_COVID19[df_patients_COVID19[\"VAX_MANU\"] == \"MODERNA\"]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "86e0e4f2",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "df_PFIZER_BIONTECH.info()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4b3cb943",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# table = pd.pivot_table(df_PFIZER_BIONTECH, values='DIED', columns=['DIED'], aggfunc=np.sum)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "349da946",
+   "metadata": {
+    "scrolled": false
+   },
+   "outputs": [],
+   "source": [
+    "df = df_PFIZER_BIONTECH[df_PFIZER_BIONTECH['DIED']=='Y'][['VAX_LOT']]\n",
+    "df"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9c5ff2fd",
+   "metadata": {
+    "scrolled": false
+   },
+   "outputs": [],
+   "source": [
+    "# df = df.groupby(['VAX_LOT']).count()\n",
+    "#df2 = df.sort_values(by=['DIED'], ascending=False)\n",
+    "#pd.set_option('display.max_rows', None)\n",
+    "#print(df2)\n",
+    "pd.set_option('display.max_rows', None)\n",
+    "df.value_counts()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "eff80ae1",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.9.7"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}