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refactoring

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frankknoll
2023-11-10 11:53:08 +01:00
parent a053c88b0a
commit 4046d09c0b
1 changed files with 24 additions and 6 deletions
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30
src/HowBadIsMyBatch.ipynb
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@@ -503,6 +503,15 @@
"prrBySymptomByVaccineWithHighPrrs" "prrBySymptomByVaccineWithHighPrrs"
] ]
}, },
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"webAppBaseDir = os.getcwd() + '/../docs/SymptomsCausedByVaccines'"
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
@@ -512,7 +521,7 @@
"source": [ "source": [
"saveProportionalReportingRatios(\n", "saveProportionalReportingRatios(\n",
" prrByVaccineBySymptomWithoutZeroPrrs,\n", " prrByVaccineBySymptomWithoutZeroPrrs,\n",
" directory = os.path.normpath(os.getcwd() + '/../docs/data/ProportionalReportingRatios/symptoms'))" " directory = os.path.normpath(webAppBaseDir + '/data/ProportionalReportingRatios/symptoms'))"
] ]
}, },
{ {
@@ -524,7 +533,7 @@
"source": [ "source": [
"saveProportionalReportingRatios(\n", "saveProportionalReportingRatios(\n",
" prrBySymptomByVaccineWithHighPrrs,\n", " prrBySymptomByVaccineWithHighPrrs,\n",
" directory = os.path.normpath(os.getcwd() + '/../docs/data/ProportionalReportingRatios/vaccines'))" " directory = os.path.normpath(webAppBaseDir + '/data/ProportionalReportingRatios/vaccines'))"
] ]
}, },
{ {
@@ -537,7 +546,7 @@
"updateHtmlFile(\n", "updateHtmlFile(\n",
" symptoms = list(prrByVaccineAndSymptom.columns),\n", " symptoms = list(prrByVaccineAndSymptom.columns),\n",
" vaccines = list(prrByVaccineAndSymptom.index),\n", " vaccines = list(prrByVaccineAndSymptom.index),\n",
" htmlFile = \"../docs/SymptomsCausedByVaccines/index.html\")" " htmlFile = os.path.normpath(webAppBaseDir + '/index.html'))"
] ]
}, },
{ {
@@ -599,6 +608,15 @@
"prrBySymptomByLotWithHighPrrs" "prrBySymptomByLotWithHighPrrs"
] ]
}, },
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"webAppBaseDir = os.getcwd() + '/../docs/SymptomsCausedByCOVIDLots'"
]
},
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": null, "execution_count": null,
@@ -607,7 +625,7 @@
"source": [ "source": [
"saveProportionalReportingRatios(\n", "saveProportionalReportingRatios(\n",
" prrByLotBySymptomWithoutZeroPrrs,\n", " prrByLotBySymptomWithoutZeroPrrs,\n",
" directory = os.path.normpath(os.getcwd() + '/../docs/SymptomsCausedByCOVIDLots/data/ProportionalReportingRatios/symptoms'))" " directory = os.path.normpath(webAppBaseDir + '/data/ProportionalReportingRatios/symptoms'))"
] ]
}, },
{ {
@@ -618,7 +636,7 @@
"source": [ "source": [
"saveProportionalReportingRatios(\n", "saveProportionalReportingRatios(\n",
" prrBySymptomByLotWithHighPrrs,\n", " prrBySymptomByLotWithHighPrrs,\n",
" directory = os.path.normpath(os.getcwd() + '/../docs/SymptomsCausedByCOVIDLots/data/ProportionalReportingRatios/vaccines'))" " directory = os.path.normpath(webAppBaseDir + '/data/ProportionalReportingRatios/vaccines'))"
] ]
}, },
{ {
@@ -630,7 +648,7 @@
"updateHtmlFile4SymptomsCausedByCOVIDLots(\n", "updateHtmlFile4SymptomsCausedByCOVIDLots(\n",
" symptoms = list(prrByLotAndSymptom.columns),\n", " symptoms = list(prrByLotAndSymptom.columns),\n",
" batches = list(prrByLotAndSymptom.index),\n", " batches = list(prrByLotAndSymptom.index),\n",
" htmlFile = \"../docs/SymptomsCausedByCOVIDLots/index.html\")" " htmlFile = os.path.normpath(webAppBaseDir + '/index.html'))"
] ]
}, },
{ {