restoreVAERSBeforeDeletionFolder()

src/HowBadIsMyBatch.ipynb

@@ -30,7 +30,23 @@
     "import pandas as pd\n",
     "\n",
     "pd.set_option('display.max_rows', 100)\n",
-    "pd.set_option('display.max_columns', None)\n"
+    "pd.set_option('display.max_columns', None)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "3b89b2d6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "# split --bytes=45MiB VAERSBeforeDeletion.7z VAERSBeforeDeletion_\n",
+    "def restoreVAERSBeforeDeletionFolder():\n",
+    "    !cat data/VAERSBeforeDeletion/VAERSBeforeDeletion_* > VAERS/VAERSBeforeDeletion.7z\n",
+    "    !cd VAERS; 7z x -y VAERSBeforeDeletion.7z\n",
+    "\n",
+    "vaersBeforeDeletionDataDir = 'VAERS/VAERSBeforeDeletion'\n",
+    "restoreVAERSBeforeDeletionFolder()"
    ]
   },
   {
@@ -127,7 +143,7 @@
    "outputs": [],
    "source": [
     "internationalVaersCovid19 = CountryColumnsMerger.mergeCountryColumnOfSrcIntoDst(\n",
-    "    src = getInternationalVaersCovid19BeforeDeletion(),\n",
+    "    src = getInternationalVaersCovid19BeforeDeletion(vaersBeforeDeletionDataDir),\n",
     "    dst = internationalVaersCovid19)\n",
     "internationalVaersCovid19"
    ]
@@ -203,7 +219,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "countryCountsByBatchcode = filterByBatchcodes(getCountryCountsByBatchcodeTable(), batchCodeTable['Batch'].values)\n",
+    "countryCountsByBatchcode = filterByBatchcodes(getCountryCountsByBatchcodeTable(vaersBeforeDeletionDataDir), batchCodeTable['Batch'].values)\n",
     "countryCountsByBatchcode"
    ]
   },
@@ -670,9 +686,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "howbadismybatch-venv-kernel",
+   "display_name": "howbadismybatch-venv",
    "language": "python",
-   "name": "howbadismybatch-venv-kernel"
+   "name": "python3"
   },
   "language_info": {
    "codemirror_mode": {
@@ -684,7 +700,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.15"
+   "version": "3.9.19"
   }
  },
  "nbformat": 4,