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refining SymptomHistogramByBatchcodeTableFactoryTest

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This commit is contained in:
frankknoll
2023-02-08 11:26:01 +01:00
parent 408f523797
commit 197321b2da
3 changed files with 26 additions and 23 deletions
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2
src/HistogramTable2DictTableConverter.py
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@@ -11,5 +11,5 @@ class HistogramTable2DictTableConverter:
@staticmethod @staticmethod
def _histogram_to_json(histogram_with_vax_lots, vax_lot_columns): def _histogram_to_json(histogram_with_vax_lots, vax_lot_columns):
histogram = histogram_with_vax_lots.reset_index(level = vax_lot_columns, drop=True) histogram = histogram_with_vax_lots.reset_index(level = vax_lot_columns, drop = True)
return histogram.to_dict() return histogram.to_dict()

8
src/SymptomHistogramByBatchcodeTableFactory.py
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@@ -2,9 +2,9 @@ class SymptomHistogramByBatchcodeTableFactory:
@staticmethod @staticmethod
def createSymptomHistogramByBatchcodeTable(symptomByBatchcodeTable): def createSymptomHistogramByBatchcodeTable(symptomByBatchcodeTable):
return ( return (symptomByBatchcodeTable
symptomByBatchcodeTable .groupby(symptomByBatchcodeTable.index.names + ['COUNTRY'])
.groupby(symptomByBatchcodeTable.index.names)
['SYMPTOM'].value_counts() ['SYMPTOM'].value_counts()
.to_frame(name = 'SYMPTOM_COUNT_BY_VAX_LOT') .to_frame(name = 'SYMPTOM_COUNT_BY_VAX_LOT')
) .reset_index(level = 'COUNTRY')
[['SYMPTOM_COUNT_BY_VAX_LOT', 'COUNTRY']])

35
src/SymptomHistogramByBatchcodeTableFactoryTest.py
View File

@@ -9,10 +9,10 @@ class SymptomHistogramByBatchcodeTableFactoryTest(unittest.TestCase):
def test_createSymptomHistogramByBatchcodeTable(self): def test_createSymptomHistogramByBatchcodeTable(self):
# Given # Given
symptomByBatchcodeTable = TestHelper.createDataFrame( symptomByBatchcodeTable = TestHelper.createDataFrame(
columns = ['SYMPTOM'], columns = ['SYMPTOM', 'COUNTRY'],
data = [ ['Blood pressure orthostatic abnormal'], data = [ ['Blood pressure orthostatic abnormal', 'Germany'],
['Blood pressure orthostatic abnormal'], ['Blood pressure orthostatic abnormal', 'Germany'],
['Blood pressure orthostatic abnormal']], ['Blood pressure orthostatic abnormal', 'Germany']],
index = pd.Index( index = pd.Index(
name = 'VAX_LOT1', name = 'VAX_LOT1',
data = ['EW0175', data = ['EW0175',
@@ -26,9 +26,9 @@ class SymptomHistogramByBatchcodeTableFactoryTest(unittest.TestCase):
assert_frame_equal( assert_frame_equal(
symptomHistogramByBatchcodeTable, symptomHistogramByBatchcodeTable,
TestHelper.createDataFrame( TestHelper.createDataFrame(
columns = ['SYMPTOM_COUNT_BY_VAX_LOT'], columns = ['SYMPTOM_COUNT_BY_VAX_LOT', 'COUNTRY'],
data = [ [1], data = [ [1, 'Germany'],
[2]], [2, 'Germany']],
index = pd.MultiIndex.from_tuples( index = pd.MultiIndex.from_tuples(
names = ['VAX_LOT1', 'SYMPTOM'], names = ['VAX_LOT1', 'SYMPTOM'],
tuples = [['1808982', 'Blood pressure orthostatic abnormal'], tuples = [['1808982', 'Blood pressure orthostatic abnormal'],
@@ -37,13 +37,14 @@ class SymptomHistogramByBatchcodeTableFactoryTest(unittest.TestCase):
def test_createSymptomHistogramByBatchcodeTable_two_VAX_LOTs_Index(self): def test_createSymptomHistogramByBatchcodeTable_two_VAX_LOTs_Index(self):
# Given # Given
symptomByBatchcodeTable = TestHelper.createDataFrame( symptomByBatchcodeTable = TestHelper.createDataFrame(
columns = ['SYMPTOM'], columns = ['SYMPTOM', 'COUNTRY'],
data = [ ['Blood pressure orthostatic abnormal'], data = [ ['Blood pressure orthostatic abnormal', 'Germany'],
['Blood pressure orthostatic abnormal'], ['Blood pressure orthostatic abnormal', 'Germany'],
['Headache']], ['Blood pressure orthostatic abnormal', 'Russian Federation'],
['Headache', 'Germany']],
index = pd.MultiIndex.from_tuples( index = pd.MultiIndex.from_tuples(
names = ['VAX_LOT1', 'VAX_LOT2'], names = ['VAX_LOT1', 'VAX_LOT2'],
tuples = [['1808982', 'EW0175']] * 3)) tuples = [['1808982', 'EW0175']] * 4))
# When # When
symptomHistogramByBatchcodeTable = SymptomHistogramByBatchcodeTableFactory.createSymptomHistogramByBatchcodeTable(symptomByBatchcodeTable) symptomHistogramByBatchcodeTable = SymptomHistogramByBatchcodeTableFactory.createSymptomHistogramByBatchcodeTable(symptomByBatchcodeTable)
@@ -52,10 +53,12 @@ class SymptomHistogramByBatchcodeTableFactoryTest(unittest.TestCase):
assert_frame_equal( assert_frame_equal(
symptomHistogramByBatchcodeTable, symptomHistogramByBatchcodeTable,
TestHelper.createDataFrame( TestHelper.createDataFrame(
columns = ['SYMPTOM_COUNT_BY_VAX_LOT'], columns = ['SYMPTOM_COUNT_BY_VAX_LOT', 'COUNTRY'],
data = [ [2], data = [ [2, 'Germany'],
[1]], [1, 'Germany'],
[1, 'Russian Federation']],
index = pd.MultiIndex.from_tuples( index = pd.MultiIndex.from_tuples(
names = ['VAX_LOT1', 'VAX_LOT2', 'SYMPTOM'], names = ['VAX_LOT1', 'VAX_LOT2', 'SYMPTOM'],
tuples = [['1808982', 'EW0175', 'Blood pressure orthostatic abnormal'], tuples = [['1808982', 'EW0175', 'Blood pressure orthostatic abnormal'],
['1808982', 'EW0175', 'Headache']]))) ['1808982', 'EW0175', 'Headache'],
['1808982', 'EW0175', 'Blood pressure orthostatic abnormal']])))