starting Drugs for Pathologies

src/HowBadIsMyBatch.ipynb

@@ -608,9 +608,136 @@
   },
   {
    "cell_type": "markdown",
-   "id": "439c055f",
+   "id": "be72f509",
    "metadata": {},
-   "source": []
+   "source": [
+    "# Drugs for Pathologies"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "c8190125",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import pandas as pd\n",
+    "import os"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "a416e3b7",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "drugs4Pathologies  = pd.read_excel(\n",
+    "        io = 'data/1000-pathologies.xlsx',\n",
+    "        converters = {\n",
+    "            'PATHOLOGY': lambda text: text.strip(),\n",
+    "            'DRUG': lambda text: text.strip() })\n",
+    "drugs4Pathologies"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "492230af",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def drugsTable2drugDescr(drugsTable):\n",
+    "    drugDescr = drugsTable.to_dict('list')\n",
+    "    del drugDescr['PATHOLOGY']\n",
+    "    return drugDescr"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "1c0166e6",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "drugDescrByPathology = drugs4Pathologies.groupby('PATHOLOGY').apply(drugsTable2drugDescr)\n",
+    "drugDescrByPathology"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "f7e83e81",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "drugDescrByPathology['bone cancer']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "0d0b6909",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "drugs4Pathologies[drugs4Pathologies['PATHOLOGY'] == 'bone cancer']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4444d234",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import shutil\n",
+    "from IOUtils import IOUtils\n",
+    "\n",
+    "def saveDrugDescriptionsForPathologies(drugDescrByPathology, directory):\n",
+    "    shutil.rmtree(directory, ignore_errors = True)\n",
+    "    filenameByPathology = {}\n",
+    "    i = 0\n",
+    "    for pathology, drugDescr in drugDescrByPathology.items():\n",
+    "        i += 1\n",
+    "        filenameByPathology[pathology] = f'{i}'\n",
+    "        drugDescr['PATHOLOGY'] = pathology\n",
+    "        IOUtils.saveDictAsJson(drugDescr, f'{directory}/{i}.json')\n",
+    "    return filenameByPathology    \n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "5bd7d025",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "webAppBaseDir = os.path.normpath(os.getcwd() + '/../docs/DrugsForPathologies')\n",
+    "webAppBaseDir"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7652a551",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "filenameByPathology = saveDrugDescriptionsForPathologies(\n",
+    "    drugDescrByPathology = drugDescrByPathology,\n",
+    "    directory = os.path.normpath(webAppBaseDir + '/data/DrugDescriptionsForPathologies'))\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "013ffd05",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "filenameByPathology"
+   ]
   }
  ],
  "metadata": {